RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PTPN18Q99952 460 aa17.14■□□□□ 0.33
SS18-204ENST00000539244 TDRD3Q9H7E2 651 aaKnown RBP17.14■□□□□ 0.33
SS18-204ENST00000539244 RBBP6Q7Z6E9 1792 aaKnown RBP17.13■□□□□ 0.33
SS18-204ENST00000539244 HDLBPQ00341 1268 aaKnown RBP17.13■□□□□ 0.33
SS18-204ENST00000539244 MS4A4AQ96JQ5 239 aa17.13■□□□□ 0.33
SS18-204ENST00000539244 BRCA2P51587 3418 aa17.12■□□□□ 0.33
SS18-204ENST00000539244 CRKP46108 304 aa17.12■□□□□ 0.33
SS18-204ENST00000539244 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.12■□□□□ 0.33
SS18-204ENST00000539244 OPTNQ96CV9 577 aa17.12■□□□□ 0.33
SS18-204ENST00000539244 BICC1Q9H694 974 aaKnown RBP17.12■□□□□ 0.33
SS18-204ENST00000539244 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.12■□□□□ 0.33
SS18-204ENST00000539244 PTPN22Q9Y2R2 807 aa17.12■□□□□ 0.33
SS18-204ENST00000539244 ZNF521Q96K83 1311 aa17.12■□□□□ 0.33
SS18-204ENST00000539244 TNNI2P48788 182 aa17.11■□□□□ 0.33
SS18-204ENST00000539244 CDAN1Q8IWY9 1227 aa17.11■□□□□ 0.33
SS18-204ENST00000539244 VGLL2Q8N8G2 317 aa17.11■□□□□ 0.33
SS18-204ENST00000539244 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.11■□□□□ 0.33
SS18-204ENST00000539244 TBC1D22AQ8WUA7 517 aa17.11■□□□□ 0.33
SS18-204ENST00000539244 ELP3Q9H9T3 547 aa17.11■□□□□ 0.33
SS18-204ENST00000539244 KIAA0100Q14667 2235 aaKnown RBP17.11■□□□□ 0.33
SS18-204ENST00000539244 TCP10L2B9ZVM9 353 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 SP3Q02447 781 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 GRIK5Q16478 980 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 ANKRD44Q8N8A2 993 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 CD99L2Q8TCZ2 262 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 ARMC5Q96C12 935 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 MRIQ9BWK5 157 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 TMEM39BQ9GZU3 492 aa17.1■□□□□ 0.33
SS18-204ENST00000539244 PDE8BO95263 885 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 MAP3K9P80192 1104 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 VGLL4Q14135 290 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 LRRC24Q50LG9 513 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 CAVIN4Q5BKX8 364 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 VPS37DQ86XT2 251 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 BRI3BPQ8WY22 251 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 EFCC1Q9HA90 598 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 SUGT1Q9Y2Z0 365 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 PTPRCP08575 1304 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 KIF16BQ96L93 1317 aa17.09■□□□□ 0.33
SS18-204ENST00000539244 POTEFA5A3E0 1075 aa17.08■□□□□ 0.32
SS18-204ENST00000539244 GTF2A2P52657 109 aa17.08■□□□□ 0.32
SS18-204ENST00000539244 CAP1Q01518 475 aa17.08■□□□□ 0.32
SS18-204ENST00000539244 METTL24Q5JXM2 366 aa17.08■□□□□ 0.32
SS18-204ENST00000539244 FKBP1CQ5VVH2 108 aa17.08■□□□□ 0.32
SS18-204ENST00000539244 MRPL50Q8N5N7 158 aaKnown RBP17.08■□□□□ 0.32
SS18-204ENST00000539244 TEKT1Q969V4 418 aa17.08■□□□□ 0.32
SS18-204ENST00000539244 IQSEC3Q9UPP2 1182 aaPredicted RBP17.08■□□□□ 0.32
SS18-204ENST00000539244 FAM83AQ86UY5 434 aa17.07■□□□□ 0.32
SS18-204ENST00000539244 FAM9BQ8IZU0 186 aa17.07■□□□□ 0.32
SS18-204ENST00000539244 CNKSR2Q8WXI2 1034 aa17.07■□□□□ 0.32
SS18-204ENST00000539244 ZDHHC15Q96MV8 337 aa17.07■□□□□ 0.32
SS18-204ENST00000539244 CSADQ9Y600 493 aa17.07■□□□□ 0.32
SS18-204ENST00000539244 RPAP1Q9BWH6 1393 aaPredicted RBP17.06■□□□□ 0.32
SS18-204ENST00000539244 MAST3O60307 1309 aa17.06■□□□□ 0.32
SS18-204ENST00000539244 CCL15-CCL14A0A0B4J2E2 113 aa17.06■□□□□ 0.32
SS18-204ENST00000539244 SPDYE5A6NIY4 337 aa17.06■□□□□ 0.32
SS18-204ENST00000539244 FGFR2P21802 821 aa17.06■□□□□ 0.32
SS18-204ENST00000539244 CHAF1AQ13111 956 aaPredicted RBP17.06■□□□□ 0.32
SS18-204ENST00000539244 CCL15Q16663 113 aa17.06■□□□□ 0.32
SS18-204ENST00000539244 ZFYVE28Q9HCC9 887 aa17.06■□□□□ 0.32
SS18-204ENST00000539244 FRAT2O75474 233 aaPredicted RBP17.05■□□□□ 0.32
SS18-204ENST00000539244 BCAMP50895 628 aa17.05■□□□□ 0.32
SS18-204ENST00000539244 TAF1CQ15572 869 aaPredicted RBP17.05■□□□□ 0.32
SS18-204ENST00000539244 APOBEC3HQ6NTF7 200 aaKnown RBP17.05■□□□□ 0.32
SS18-204ENST00000539244 HHIPL2Q6UWX4 724 aa17.05■□□□□ 0.32
SS18-204ENST00000539244 FAM43AQ8N2R8 423 aa17.05■□□□□ 0.32
SS18-204ENST00000539244 GCC1Q96CN9 775 aa17.05■□□□□ 0.32
SS18-204ENST00000539244 USP44Q9H0E7 712 aa17.05■□□□□ 0.32
SS18-204ENST00000539244 ZCCHC17Q9NP64 241 aaKnown RBP17.05■□□□□ 0.32
SS18-204ENST00000539244 SNCAIPQ9Y6H5 919 aa17.05■□□□□ 0.32
SS18-204ENST00000539244 ZNF316A6NFI3 1004 aaPredicted RBP17.04■□□□□ 0.32
SS18-204ENST00000539244 CACNB3P54284 484 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 ARHGEF6Q15052 776 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 PUM3Q15397 648 aaKnown RBP17.04■□□□□ 0.32
SS18-204ENST00000539244 ERO1BQ86YB8 467 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 HOOK2Q96ED9 719 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 OTUD5Q96G74 571 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 TMOD2Q9NZR1 351 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 MYH13Q9UKX3 1938 aa17.04■□□□□ 0.32
SS18-204ENST00000539244 IFIT1P09914 478 aaKnown RBP17.03■□□□□ 0.32
SS18-204ENST00000539244 KLHDC4Q8TBB5 520 aa17.03■□□□□ 0.32
SS18-204ENST00000539244 ZNF333Q96JL9 665 aa17.03■□□□□ 0.32
SS18-204ENST00000539244 TLR2O60603 784 aa17.02■□□□□ 0.32
SS18-204ENST00000539244 CETPP11597 493 aa17.02■□□□□ 0.32
SS18-204ENST00000539244 RFX5P48382 616 aaPredicted RBP17.02■□□□□ 0.32
SS18-204ENST00000539244 SSH1Q8WYL5 1049 aa17.02■□□□□ 0.32
SS18-204ENST00000539244 WRNIP1Q96S55 665 aa17.02■□□□□ 0.32
SS18-204ENST00000539244 E9PSI1 815 aa17.01■□□□□ 0.31
SS18-204ENST00000539244 EYA2O00167 538 aa17.01■□□□□ 0.31
SS18-204ENST00000539244 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
SS18-204ENST00000539244 PPIL2Q13356 520 aa17.01■□□□□ 0.31
SS18-204ENST00000539244 DCAF15Q66K64 600 aa17.01■□□□□ 0.31
SS18-204ENST00000539244 WDR66Q8TBY9 1149 aa17.01■□□□□ 0.31
SS18-204ENST00000539244 LPIN2Q92539 896 aa17.01■□□□□ 0.31
SS18-204ENST00000539244 BTBD19C9JJ37 291 aa17■□□□□ 0.31
SS18-204ENST00000539244 IRF6O14896 467 aa17■□□□□ 0.31
SS18-204ENST00000539244 WDHD1O75717 1129 aaPredicted RBP17■□□□□ 0.31
SS18-204ENST00000539244 SLC5A1P13866 664 aa17■□□□□ 0.31
SS18-204ENST00000539244 EN2P19622 333 aaPredicted RBP17■□□□□ 0.31
SS18-204ENST00000539244 SNAPC2Q13487 334 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms