RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 CA12O43570 354 aa23.53■■□□□ 1.36
CLIP1-211ENST00000539080 SLC10A3P09131 477 aa23.53■■□□□ 1.36
CLIP1-211ENST00000539080 SPDYE2Q495Y8 402 aa23.53■■□□□ 1.36
CLIP1-211ENST00000539080 TEKT1Q969V4 418 aa23.53■■□□□ 1.36
CLIP1-211ENST00000539080 TFCP2Q12800 502 aa23.52■■□□□ 1.36
CLIP1-211ENST00000539080 POLA2Q14181 598 aa23.52■■□□□ 1.36
CLIP1-211ENST00000539080 GRIK5Q16478 980 aa23.52■■□□□ 1.36
CLIP1-211ENST00000539080 VEZTQ9HBM0 779 aa23.52■■□□□ 1.36
CLIP1-211ENST00000539080 DENND2AQ9ULE3 1009 aa23.52■■□□□ 1.36
CLIP1-211ENST00000539080 ATP8B2P98198 1209 aa23.51■■□□□ 1.35
CLIP1-211ENST00000539080 G3BP1Q13283 466 aaKnown RBP eCLIP23.51■■□□□ 1.35
CLIP1-211ENST00000539080 TTLL12Q14166 644 aaPredicted RBP23.51■■□□□ 1.35
CLIP1-211ENST00000539080 ARMC9Q7Z3E5 817 aa23.51■■□□□ 1.35
CLIP1-211ENST00000539080 SSH3Q8TE77 659 aa23.51■■□□□ 1.35
CLIP1-211ENST00000539080 ZNF70Q9UC06 446 aaPredicted RBP23.51■■□□□ 1.35
CLIP1-211ENST00000539080 SALL1Q9NSC2 1324 aa23.51■■□□□ 1.35
CLIP1-211ENST00000539080 A0A1B0GUL7 405 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 PHKA1P46020 1223 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 SUPT20HL1Q3ZLR7 823 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 IFFO2Q5TF58 517 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 CCDC102BQ68D86 513 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 HHIPL2Q6UWX4 724 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 ZDHHC15Q96MV8 337 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 TDRD3Q9H7E2 651 aaKnown RBP23.5■■□□□ 1.35
CLIP1-211ENST00000539080 AOX1Q06278 1338 aa23.5■■□□□ 1.35
CLIP1-211ENST00000539080 PDS5AQ29RF7 1337 aaKnown RBP23.5■■□□□ 1.35
CLIP1-211ENST00000539080 UBE2Q2LH0YL09 131 aa23.49■■□□□ 1.35
CLIP1-211ENST00000539080 HSPA8P11142 646 aaKnown RBP23.49■■□□□ 1.35
CLIP1-211ENST00000539080 TIMM10P62072 90 aa23.49■■□□□ 1.35
CLIP1-211ENST00000539080 MVPQ14764 893 aaKnown RBP23.49■■□□□ 1.35
CLIP1-211ENST00000539080 MOB2Q70IA6 237 aa23.49■■□□□ 1.35
CLIP1-211ENST00000539080 RASAL3Q86YV0 1011 aa23.49■■□□□ 1.35
CLIP1-211ENST00000539080 REM2Q8IYK8 340 aaPredicted RBP23.49■■□□□ 1.35
CLIP1-211ENST00000539080 ADORA1P30542 326 aa23.48■■□□□ 1.35
CLIP1-211ENST00000539080 TNNI2P48788 182 aa23.48■■□□□ 1.35
CLIP1-211ENST00000539080 RASA3Q14644 834 aa23.48■■□□□ 1.35
CLIP1-211ENST00000539080 MAP3K11Q16584 847 aa23.48■■□□□ 1.35
CLIP1-211ENST00000539080 ZGPATQ8N5A5 531 aaKnown RBP23.48■■□□□ 1.35
CLIP1-211ENST00000539080 XAGE2Q96GT9 111 aa23.48■■□□□ 1.35
CLIP1-211ENST00000539080 RCAN3Q9UKA8 241 aa23.48■■□□□ 1.35
CLIP1-211ENST00000539080 UNCXA6NJT0 531 aa23.47■■□□□ 1.35
CLIP1-211ENST00000539080 PPP1R12BO60237 982 aaPredicted RBP23.47■■□□□ 1.35
CLIP1-211ENST00000539080 LBX1P52954 281 aa23.47■■□□□ 1.35
CLIP1-211ENST00000539080 KIF23Q02241 960 aaPredicted RBP23.47■■□□□ 1.35
CLIP1-211ENST00000539080 PANK1Q8TE04 598 aa23.47■■□□□ 1.35
CLIP1-211ENST00000539080 ZIC5Q96T25 663 aa23.47■■□□□ 1.35
CLIP1-211ENST00000539080 SSC5DA1L4H1 1573 aa23.47■■□□□ 1.35
CLIP1-211ENST00000539080 LDLRAD1Q5T700 205 aa23.46■■□□□ 1.35
CLIP1-211ENST00000539080 C1orf115Q9H7X2 142 aa23.46■■□□□ 1.35
CLIP1-211ENST00000539080 ANGEL1Q9UNK9 670 aaKnown RBP23.46■■□□□ 1.35
CLIP1-211ENST00000539080 LDHBP07195 334 aaKnown RBP23.45■■□□□ 1.34
CLIP1-211ENST00000539080 FKBP1CQ5VVH2 108 aa23.45■■□□□ 1.34
CLIP1-211ENST00000539080 APOBEC3HQ6NTF7 200 aaKnown RBP23.45■■□□□ 1.34
CLIP1-211ENST00000539080 TNS4Q8IZW8 715 aa23.45■■□□□ 1.34
CLIP1-211ENST00000539080 NEUROD6Q96NK8 337 aa23.45■■□□□ 1.34
CLIP1-211ENST00000539080 GPR108Q9NPR9 543 aa23.45■■□□□ 1.34
CLIP1-211ENST00000539080 TMOD2Q9NZR1 351 aa23.45■■□□□ 1.34
CLIP1-211ENST00000539080 NOP58Q9Y2X3 529 aaKnown RBP23.45■■□□□ 1.34
CLIP1-211ENST00000539080 PRDX5P30044 214 aa23.44■■□□□ 1.34
CLIP1-211ENST00000539080 RASGRF1Q13972 1273 aa23.44■■□□□ 1.34
CLIP1-211ENST00000539080 PRKG1Q13976 671 aa23.44■■□□□ 1.34
CLIP1-211ENST00000539080 NBPF12Q5TAG4 269 aaPredicted RBP23.44■■□□□ 1.34
CLIP1-211ENST00000539080 SAGE1Q9NXZ1 904 aa23.44■■□□□ 1.34
CLIP1-211ENST00000539080 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.44■■□□□ 1.34
CLIP1-211ENST00000539080 SURF6O75683 361 aaKnown RBP23.43■■□□□ 1.34
CLIP1-211ENST00000539080 DDX19BQ9UMR2 479 aa23.43■■□□□ 1.34
CLIP1-211ENST00000539080 AKAP11Q9UKA4 1901 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 TCP10L2B9ZVM9 353 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 OS9Q13438 667 aaPredicted RBP23.42■■□□□ 1.34
CLIP1-211ENST00000539080 GORABQ5T7V8 394 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 CEP85Q6P2H3 762 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 FAM83AQ86UY5 434 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 TEPSINQ96N21 525 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 CSRNP1Q96S65 589 aa23.42■■□□□ 1.34
CLIP1-211ENST00000539080 CHMP4BQ9H444 224 aaKnown RBP23.42■■□□□ 1.34
CLIP1-211ENST00000539080 IREB2P48200 963 aaKnown RBP23.41■■□□□ 1.34
CLIP1-211ENST00000539080 SPTY2D1Q68D10 685 aaPredicted RBP23.41■■□□□ 1.34
CLIP1-211ENST00000539080 DAGLAQ9Y4D2 1042 aa23.41■■□□□ 1.34
CLIP1-211ENST00000539080 ARID4AP29374 1257 aaPredicted RBP23.4■■□□□ 1.34
CLIP1-211ENST00000539080 TMEM39BQ9GZU3 492 aa23.4■■□□□ 1.34
CLIP1-211ENST00000539080 RPAP1Q9BWH6 1393 aaPredicted RBP23.4■■□□□ 1.34
CLIP1-211ENST00000539080 UQCRFS1P1P0C7P4 283 aa23.39■■□□□ 1.33
CLIP1-211ENST00000539080 DIXDC1Q155Q3 683 aa23.39■■□□□ 1.33
CLIP1-211ENST00000539080 TNNI3KQ59H18 835 aa23.39■■□□□ 1.33
CLIP1-211ENST00000539080 SLF2Q8IX21 1173 aa23.39■■□□□ 1.33
CLIP1-211ENST00000539080 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.39■■□□□ 1.33
CLIP1-211ENST00000539080 FZD1Q9UP38 647 aa23.39■■□□□ 1.33
CLIP1-211ENST00000539080 FPGT-TNNI3KV9GXZ4 949 aa23.39■■□□□ 1.33
CLIP1-211ENST00000539080 LAMB1P07942 1786 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 USP2O75604 605 aaPredicted RBP23.38■■□□□ 1.33
CLIP1-211ENST00000539080 ANKRD13AQ8IZ07 590 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 SPATA5Q8NB90 893 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 HOOK2Q96ED9 719 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 SLC10A4Q96EP9 437 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 HMG20BQ9P0W2 317 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 ABCF2Q9UG63 623 aa23.38■■□□□ 1.33
CLIP1-211ENST00000539080 ZBTB48P10074 688 aaPredicted RBP23.37■■□□□ 1.33
CLIP1-211ENST00000539080 CACNB3P54284 484 aa23.37■■□□□ 1.33
CLIP1-211ENST00000539080 PDE3AQ14432 1141 aa23.37■■□□□ 1.33
CLIP1-211ENST00000539080 SPRYD7Q5W111 196 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms