RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 STAP2Q9UGK3 403 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 FEZ2Q9UHY8 353 aaPredicted RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 PREX1Q8TCU6 1659 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 ATP7AQ04656 1500 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 ARHGEF10O15013 1369 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 STX6O43752 255 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 NRDCO43847 1150 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 GADD45BO75293 160 aaPredicted RBP7.87□□□□□ -1.15
USP28-207ENST00000538475 CAPN2P17655 700 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 PDCP20941 246 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 GPC1P35052 558 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 ZNF75DP51815 510 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 TUBB4BP68371 445 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 CLN3Q13286 438 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 PTPN14Q15678 1187 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 TPD52L1Q16890 204 aaPredicted RBP7.87□□□□□ -1.15
USP28-207ENST00000538475 MAP7D1Q3KQU3 841 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 PLPP7Q8NBV4 271 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 CHMP7Q8WUX9 453 aaPredicted RBP7.87□□□□□ -1.15
USP28-207ENST00000538475 RTF1Q92541 710 aaKnown RBP7.87□□□□□ -1.15
USP28-207ENST00000538475 TERF2IPQ9NYB0 399 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 IMPACTQ9P2X3 320 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 HECW2Q9P2P5 1572 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 TSPOAP1O95153 1857 aa7.87□□□□□ -1.15
USP28-207ENST00000538475 CLGNO14967 610 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 CTAGE5O15320 804 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 HSPA4P34932 840 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 GMPRP36959 345 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 TNNT3P45378 269 aaPredicted RBP7.86□□□□□ -1.15
USP28-207ENST00000538475 PDE1AP54750 535 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 LCE2CQ5TA81 110 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 CEP85Q6P2H3 762 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 CCDC186Q7Z3E2 898 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 RPAINQ86UA6 219 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 RGS22Q8NE09 1264 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 TM6SF1Q9BZW5 370 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 SCAND2PQ9GZW5 306 aaPredicted RBP7.86□□□□□ -1.15
USP28-207ENST00000538475 NUP62CLQ9H1M0 184 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 SLC12A5Q9H2X9 1139 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 LIMCH1Q9UPQ0 1083 aa7.86□□□□□ -1.15
USP28-207ENST00000538475 AATKQ6ZMQ8 1374 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 UGGT1Q9NYU2 1555 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 NPHP3Q7Z494 1330 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 ADGRF5Q8IZF2 1346 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 SALL3Q9BXA9 1300 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 SLC35F4A4IF30 521 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 IVLP07476 585 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 RHOQP17081 205 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 PTGS1P23219 599 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 HNRNPH2P55795 449 aaKnown RBP7.85□□□□□ -1.15
USP28-207ENST00000538475 ESCO1Q5FWF5 840 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 JAKMIP3Q5VZ66 844 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 CNKSR1Q969H4 720 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 EXOC4Q96A65 974 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 SLC26A8Q96RN1 970 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 UBXN6Q9BZV1 441 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 SMC3Q9UQE7 1217 aa7.85□□□□□ -1.15
USP28-207ENST00000538475 SOS1Q07889 1333 aaPredicted RBP7.84□□□□□ -1.15
USP28-207ENST00000538475 U2SURPO15042 1029 aaKnown RBP7.84□□□□□ -1.15
USP28-207ENST00000538475 RPS6KA5O75582 802 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 SKIP12755 728 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 SYT1P21579 422 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 CHMLP26374 656 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 CASQ1P31415 396 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 KRT85P78386 507 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 TYRO3Q06418 890 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 TWISTNBQ3B726 338 aaPredicted RBP7.84□□□□□ -1.15
USP28-207ENST00000538475 LRRC8AQ8IWT6 810 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 DRC7Q8IY82 874 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 C17orf53Q8N3J3 647 aaPredicted RBP7.84□□□□□ -1.15
USP28-207ENST00000538475 GOLGA5Q8TBA6 731 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 JARID2Q92833 1246 aaPredicted RBP7.84□□□□□ -1.15
USP28-207ENST00000538475 C16orf45Q96MC5 204 aaPredicted RBP7.84□□□□□ -1.15
USP28-207ENST00000538475 TRIM5Q9C035 493 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 ALG2Q9H553 416 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 CAMSAP1Q5T5Y3 1602 aa7.84□□□□□ -1.15
USP28-207ENST00000538475 ABCC3O15438 1527 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 TTC21BQ7Z4L5 1316 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 ATP7BP35670 1465 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 CDC14CA4D256 554 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 POM121CA8CG34 1229 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 PIK3CDO00329 1044 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 ZRANB2O95218 330 aaKnown RBP eCLIP7.83□□□□□ -1.161e-6■■■■■ 42
USP28-207ENST00000538475 ITGA6P23229 1130 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 NOP2P46087 812 aaKnown RBP7.83□□□□□ -1.16
USP28-207ENST00000538475 CCT4P50991 539 aaKnown RBP7.83□□□□□ -1.16
USP28-207ENST00000538475 RAD51AP2Q09MP3 1159 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 POU4F2Q12837 409 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 CCDC93Q567U6 631 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 ICE2Q659A1 982 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 FBXO38Q6PIJ6 1188 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 TMCO3Q6UWJ1 677 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 ZNF622Q969S3 477 aaKnown RBP eCLIP7.83□□□□□ -1.16
USP28-207ENST00000538475 TTC14Q96N46 770 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 TACO1Q9BSH4 297 aaKnown RBP7.83□□□□□ -1.16
USP28-207ENST00000538475 UTP14AQ9BVJ6 771 aaKnown RBP7.83□□□□□ -1.16
USP28-207ENST00000538475 FAM107BQ9H098 131 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 OSBPL5Q9H0X9 879 aaPredicted RBP7.83□□□□□ -1.16
USP28-207ENST00000538475 ALDH8A1Q9H2A2 487 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms