RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 RGS19P49795 217 aa17.41■□□□□ 0.38
SYNE1-235ENST00000537033 INHBEP58166 350 aa17.41■□□□□ 0.38
SYNE1-235ENST00000537033 NOM1Q5C9Z4 860 aaKnown RBP17.41■□□□□ 0.38
SYNE1-235ENST00000537033 ZNF296Q8WUU4 475 aaPredicted RBP17.41■□□□□ 0.38
SYNE1-235ENST00000537033 WNK4Q96J92 1243 aa17.41■□□□□ 0.38
SYNE1-235ENST00000537033 TDRD3Q9H7E2 651 aaKnown RBP17.41■□□□□ 0.38
SYNE1-235ENST00000537033 HDAC5Q9UQL6 1122 aa17.41■□□□□ 0.38
SYNE1-235ENST00000537033 MAST3O60307 1309 aa17.41■□□□□ 0.38
SYNE1-235ENST00000537033 CCER2I3L3R5 266 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 GPR25O00155 361 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 EYA2O00167 538 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 SLC5A1P13866 664 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 HDLBPQ00341 1268 aaKnown RBP17.4■□□□□ 0.38
SYNE1-235ENST00000537033 PKN2Q16513 984 aaKnown RBP17.4■□□□□ 0.38
SYNE1-235ENST00000537033 ANKRD13AQ8IZ07 590 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 TEKT1Q969V4 418 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 CLMNQ96JQ2 1002 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 API5Q9BZZ5 524 aaKnown RBP17.4■□□□□ 0.38
SYNE1-235ENST00000537033 TMOD2Q9NZR1 351 aa17.4■□□□□ 0.38
SYNE1-235ENST00000537033 TCP10L2B9ZVM9 353 aa17.39■□□□□ 0.37
SYNE1-235ENST00000537033 BCAMP50895 628 aa17.39■□□□□ 0.37
SYNE1-235ENST00000537033 TRMT2AQ8IZ69 625 aaKnown RBP17.39■□□□□ 0.37
SYNE1-235ENST00000537033 CFHR5Q9BXR6 569 aa17.39■□□□□ 0.37
SYNE1-235ENST00000537033 SUGT1Q9Y2Z0 365 aa17.39■□□□□ 0.37
SYNE1-235ENST00000537033 LPIN2Q92539 896 aa17.38■□□□□ 0.37
SYNE1-235ENST00000537033 NOB1Q9ULX3 412 aaKnown RBP17.38■□□□□ 0.37
SYNE1-235ENST00000537033 FKTNO75072 461 aa17.37■□□□□ 0.37
SYNE1-235ENST00000537033 USP2O75604 605 aaPredicted RBP17.37■□□□□ 0.37
SYNE1-235ENST00000537033 FGFR2P21802 821 aa17.37■□□□□ 0.37
SYNE1-235ENST00000537033 RFX5P48382 616 aaPredicted RBP17.37■□□□□ 0.37
SYNE1-235ENST00000537033 OTUD7BQ6GQQ9 843 aa17.37■□□□□ 0.37
SYNE1-235ENST00000537033 IFNL1Q8IU54 200 aa17.37■□□□□ 0.37
SYNE1-235ENST00000537033 FBXO3Q9UK99 471 aa17.37■□□□□ 0.37
SYNE1-235ENST00000537033 CIAO1O76071 339 aa17.36■□□□□ 0.37
SYNE1-235ENST00000537033 GRIK5Q16478 980 aa17.36■□□□□ 0.37
SYNE1-235ENST00000537033 WDR66Q8TBY9 1149 aa17.36■□□□□ 0.37
SYNE1-235ENST00000537033 ZDHHC15Q96MV8 337 aa17.36■□□□□ 0.37
SYNE1-235ENST00000537033 TMEM39BQ9GZU3 492 aa17.36■□□□□ 0.37
SYNE1-235ENST00000537033 SIL1Q9H173 461 aa17.36■□□□□ 0.37
SYNE1-235ENST00000537033 GNL3LQ9NVN8 582 aaKnown RBP17.36■□□□□ 0.37
SYNE1-235ENST00000537033 SOX10P56693 466 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 HOOK2Q96ED9 719 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 MRIQ9BWK5 157 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 ELP3Q9H9T3 547 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 CEP126Q9P2H0 1117 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 HPS5Q9UPZ3 1129 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 CSADQ9Y600 493 aa17.35■□□□□ 0.37
SYNE1-235ENST00000537033 LRRFIP2Q9Y608 721 aaKnown RBP17.35■□□□□ 0.37
SYNE1-235ENST00000537033 ATP2B3Q16720 1220 aa17.34■□□□□ 0.37
SYNE1-235ENST00000537033 ATG9AQ7Z3C6 839 aa17.34■□□□□ 0.37
SYNE1-235ENST00000537033 OPTNQ96CV9 577 aa17.34■□□□□ 0.37
SYNE1-235ENST00000537033 TEPSINQ96N21 525 aa17.34■□□□□ 0.37
SYNE1-235ENST00000537033 IGF2BP3O00425 579 aaKnown RBP eCLIP17.33■□□□□ 0.36
SYNE1-235ENST00000537033 IL15P40933 162 aaPredicted RBP17.33■□□□□ 0.36
SYNE1-235ENST00000537033 CACNB3P54284 484 aa17.33■□□□□ 0.36
SYNE1-235ENST00000537033 FBXO46Q6PJ61 603 aaPredicted RBP17.33■□□□□ 0.36
SYNE1-235ENST00000537033 HHIPL2Q6UWX4 724 aa17.33■□□□□ 0.36
SYNE1-235ENST00000537033 CDAN1Q8IWY9 1227 aa17.33■□□□□ 0.36
SYNE1-235ENST00000537033 RARSP54136 660 aaKnown RBP17.32■□□□□ 0.36
SYNE1-235ENST00000537033 MAP3K9P80192 1104 aa17.32■□□□□ 0.36
SYNE1-235ENST00000537033 VGLL4Q14135 290 aa17.32■□□□□ 0.36
SYNE1-235ENST00000537033 FKBP1CQ5VVH2 108 aa17.32■□□□□ 0.36
SYNE1-235ENST00000537033 FAM83AQ86UY5 434 aa17.32■□□□□ 0.36
SYNE1-235ENST00000537033 ARHGAP45Q92619 1136 aa17.32■□□□□ 0.36
SYNE1-235ENST00000537033 R3HDMLQ9H3Y0 253 aa17.32■□□□□ 0.36
SYNE1-235ENST00000537033 RPAP1Q9BWH6 1393 aaPredicted RBP17.31■□□□□ 0.36
SYNE1-235ENST00000537033 GNAI3P08754 354 aa17.31■□□□□ 0.36
SYNE1-235ENST00000537033 GJA5P36382 358 aa17.31■□□□□ 0.36
SYNE1-235ENST00000537033 APOBEC3HQ6NTF7 200 aaKnown RBP17.31■□□□□ 0.36
SYNE1-235ENST00000537033 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.31■□□□□ 0.36
SYNE1-235ENST00000537033 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.31■□□□□ 0.36
SYNE1-235ENST00000537033 MEIS3Q99687 375 aa17.31■□□□□ 0.36
SYNE1-235ENST00000537033 AK9Q5TCS8 1911 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 SEMA3EO15041 775 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 IPO8O15397 1037 aaKnown RBP17.3■□□□□ 0.36
SYNE1-235ENST00000537033 GTF2A2P52657 109 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 CRHR2Q13324 411 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 DCAF15Q66K64 600 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 ERO1AQ96HE7 468 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 DENND2AQ9ULE3 1009 aa17.3■□□□□ 0.36
SYNE1-235ENST00000537033 TESPA1A2RU30 521 aaPredicted RBP17.29■□□□□ 0.36
SYNE1-235ENST00000537033 LDHBP07195 334 aaKnown RBP17.29■□□□□ 0.36
SYNE1-235ENST00000537033 INTS3Q68E01 1043 aaKnown RBP17.29■□□□□ 0.36
SYNE1-235ENST00000537033 ZGPATQ8N5A5 531 aaKnown RBP17.29■□□□□ 0.36
SYNE1-235ENST00000537033 OTUD5Q96G74 571 aa17.29■□□□□ 0.36
SYNE1-235ENST00000537033 WRNIP1Q96S55 665 aa17.29■□□□□ 0.36
SYNE1-235ENST00000537033 COPRSQ9NQ92 184 aa17.29■□□□□ 0.36
SYNE1-235ENST00000537033 PA2G4Q9UQ80 394 aaKnown RBP17.29■□□□□ 0.36
SYNE1-235ENST00000537033 TRIM17Q9Y577 477 aa17.29■□□□□ 0.36
SYNE1-235ENST00000537033 CCL15-CCL14A0A0B4J2E2 113 aa17.28■□□□□ 0.36
SYNE1-235ENST00000537033 WDHD1O75717 1129 aaPredicted RBP17.28■□□□□ 0.36
SYNE1-235ENST00000537033 CCL15Q16663 113 aa17.28■□□□□ 0.36
SYNE1-235ENST00000537033 DAGLAQ9Y4D2 1042 aa17.28■□□□□ 0.36
SYNE1-235ENST00000537033 SALL1Q9NSC2 1324 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 SPDYE5A6NIY4 337 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 SRGAP3O43295 1099 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 PRDX5P30044 214 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 DIXDC1Q155Q3 683 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 ERO1BQ86YB8 467 aa17.27■□□□□ 0.36
SYNE1-235ENST00000537033 CNKSR2Q8WXI2 1034 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms