RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 RBM5P52756 815 aaKnown RBP eCLIP24.41■■□□□ 1.5
CPSF1-209ENST00000532725 CCDC158Q5M9N0 1113 aa24.41■■□□□ 1.5
CPSF1-209ENST00000532725 DCTPP1Q9H773 170 aa24.41■■□□□ 1.5
CPSF1-209ENST00000532725 IL1RAPL2Q9NP60 686 aa24.41■■□□□ 1.5
CPSF1-209ENST00000532725 TLR7Q9NYK1 1049 aaKnown RBP24.41■■□□□ 1.5
CPSF1-209ENST00000532725 SCAF8Q9UPN6 1271 aaKnown RBP24.41■■□□□ 1.5
CPSF1-209ENST00000532725 AOX1Q06278 1338 aa24.4■■□□□ 1.5
CPSF1-209ENST00000532725 APBB1O00213 710 aa24.4■■□□□ 1.5
CPSF1-209ENST00000532725 SPATA5Q8NB90 893 aa24.4■■□□□ 1.5
CPSF1-209ENST00000532725 ZNF512BQ96KM6 892 aaPredicted RBP24.4■■□□□ 1.5
CPSF1-209ENST00000532725 CELF2O95319 508 aaKnown RBP24.39■■□□□ 1.49
CPSF1-209ENST00000532725 PRDX5P30044 214 aa24.39■■□□□ 1.49
CPSF1-209ENST00000532725 MCAMP43121 646 aa24.39■■□□□ 1.49
CPSF1-209ENST00000532725 AACSQ86V21 672 aa24.39■■□□□ 1.49
CPSF1-209ENST00000532725 LDHBP07195 334 aaKnown RBP24.38■■□□□ 1.49
CPSF1-209ENST00000532725 TTC39AQ5SRH9 613 aa24.38■■□□□ 1.49
CPSF1-209ENST00000532725 HHIPL2Q6UWX4 724 aa24.38■■□□□ 1.49
CPSF1-209ENST00000532725 PI16Q6UXB8 463 aa24.38■■□□□ 1.49
CPSF1-209ENST00000532725 CLASRPQ8N2M8 674 aaKnown RBP24.38■■□□□ 1.49
CPSF1-209ENST00000532725 ZGPATQ8N5A5 531 aaKnown RBP24.38■■□□□ 1.49
CPSF1-209ENST00000532725 TEKT1Q969V4 418 aa24.38■■□□□ 1.49
CPSF1-209ENST00000532725 MAST3O60307 1309 aa24.37■■□□□ 1.49
CPSF1-209ENST00000532725 MYO1BO43795 1136 aa24.37■■□□□ 1.49
CPSF1-209ENST00000532725 AAMPQ13685 434 aa24.37■■□□□ 1.49
CPSF1-209ENST00000532725 ZDHHC15Q96MV8 337 aa24.37■■□□□ 1.49
CPSF1-209ENST00000532725 APOBEC3HQ6NTF7 200 aaKnown RBP24.36■■□□□ 1.49
CPSF1-209ENST00000532725 APOBEC3FQ8IUX4 373 aaKnown RBP24.36■■□□□ 1.49
CPSF1-209ENST00000532725 CDCA5Q96FF9 252 aa24.36■■□□□ 1.49
CPSF1-209ENST00000532725 TDRD3Q9H7E2 651 aaKnown RBP24.36■■□□□ 1.49
CPSF1-209ENST00000532725 ZNF70Q9UC06 446 aaPredicted RBP24.36■■□□□ 1.49
CPSF1-209ENST00000532725 ABCF2Q9UG63 623 aa24.36■■□□□ 1.49
CPSF1-209ENST00000532725 CLRN2A0PK11 232 aa24.35■■□□□ 1.49
CPSF1-209ENST00000532725 SPDYE2Q495Y8 402 aa24.35■■□□□ 1.49
CPSF1-209ENST00000532725 SPTY2D1Q68D10 685 aaPredicted RBP24.35■■□□□ 1.49
CPSF1-209ENST00000532725 TBC1D9Q6ZT07 1266 aa24.35■■□□□ 1.49
CPSF1-209ENST00000532725 ZNF408Q9H9D4 720 aa24.35■■□□□ 1.49
CPSF1-209ENST00000532725 MYH13Q9UKX3 1938 aa24.35■■□□□ 1.49
CPSF1-209ENST00000532725 DIXDC1Q155Q3 683 aa24.34■■□□□ 1.49
CPSF1-209ENST00000532725 PRAMEF18Q5VWM3 479 aa24.34■■□□□ 1.49
CPSF1-209ENST00000532725 EXOC6Q8TAG9 804 aa24.34■■□□□ 1.49
CPSF1-209ENST00000532725 LRRCC1Q9C099 1032 aa24.34■■□□□ 1.49
CPSF1-209ENST00000532725 SNRKQ9NRH2 765 aa24.34■■□□□ 1.49
CPSF1-209ENST00000532725 TRPM7Q96QT4 1865 aa24.33■■□□□ 1.49
CPSF1-209ENST00000532725 ERICH6Q7L0X2 663 aa24.33■■□□□ 1.49
CPSF1-209ENST00000532725 KLRG1Q96E93 195 aa24.33■■□□□ 1.49
CPSF1-209ENST00000532725 DEFB129Q9H1M3 183 aa24.33■■□□□ 1.49
CPSF1-209ENST00000532725 TLL2Q9Y6L7 1015 aa24.33■■□□□ 1.49
CPSF1-209ENST00000532725 IFIT2P09913 472 aaKnown RBP24.32■■□□□ 1.48
CPSF1-209ENST00000532725 SAPCD2Q86UD0 394 aa24.32■■□□□ 1.48
CPSF1-209ENST00000532725 ABT1Q9ULW3 272 aaKnown RBP24.32■■□□□ 1.48
CPSF1-209ENST00000532725 DAGLAQ9Y4D2 1042 aa24.32■■□□□ 1.48
CPSF1-209ENST00000532725 RASSF10A6NK89 507 aa24.31■■□□□ 1.48
CPSF1-209ENST00000532725 SMARCA5O60264 1052 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-209ENST00000532725 CYP2E1P05181 493 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-209ENST00000532725 ZNF384Q8TF68 577 aa24.31■■□□□ 1.48
CPSF1-209ENST00000532725 FAM163AQ96GL9 167 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-209ENST00000532725 VEZTQ9HBM0 779 aa24.31■■□□□ 1.48
CPSF1-209ENST00000532725 ZAP70P43403 619 aa24.3■■□□□ 1.48
CPSF1-209ENST00000532725 MECOMQ03112 1051 aa24.3■■□□□ 1.48
CPSF1-209ENST00000532725 DEFB115Q30KQ5 88 aa24.3■■□□□ 1.48
CPSF1-209ENST00000532725 BCL11AQ9H165 835 aa24.3■■□□□ 1.48
CPSF1-209ENST00000532725 GBA2Q9HCG7 927 aaPredicted RBP24.3■■□□□ 1.48
CPSF1-209ENST00000532725 MKRN1Q9UHC7 482 aaKnown RBP24.3■■□□□ 1.48
CPSF1-209ENST00000532725 AKAP11Q9UKA4 1901 aa24.29■■□□□ 1.48
CPSF1-209ENST00000532725 HDAC1Q13547 482 aaPredicted RBP24.29■■□□□ 1.48
CPSF1-209ENST00000532725 DZIP1Q86YF9 867 aaKnown RBP24.29■■□□□ 1.48
CPSF1-209ENST00000532725 C2orf69Q8N8R5 385 aa24.29■■□□□ 1.48
CPSF1-209ENST00000532725 NSUN4Q96CB9 384 aaKnown RBP24.29■■□□□ 1.48
CPSF1-209ENST00000532725 PPP2R3BQ9Y5P8 575 aa24.29■■□□□ 1.48
CPSF1-209ENST00000532725 CNTNAP1P78357 1384 aa24.29■■□□□ 1.48
CPSF1-209ENST00000532725 RASA3Q14644 834 aa24.28■■□□□ 1.48
CPSF1-209ENST00000532725 CDC42EP5Q6NZY7 148 aa24.28■■□□□ 1.48
CPSF1-209ENST00000532725 LRP2BPQ9P2M1 347 aa24.28■■□□□ 1.48
CPSF1-209ENST00000532725 GAKO14976 1311 aa24.28■■□□□ 1.48
CPSF1-209ENST00000532725 TCP10L2B9ZVM9 353 aa24.27■■□□□ 1.48
CPSF1-209ENST00000532725 TNFAIP1Q13829 316 aa24.27■■□□□ 1.48
CPSF1-209ENST00000532725 SLF2Q8IX21 1173 aa24.27■■□□□ 1.48
CPSF1-209ENST00000532725 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.27■■□□□ 1.48
CPSF1-209ENST00000532725 RAI14Q9P0K7 980 aa24.27■■□□□ 1.48
CPSF1-209ENST00000532725 CACNB3P54284 484 aa24.26■■□□□ 1.47
CPSF1-209ENST00000532725 FKBP1CQ5VVH2 108 aa24.26■■□□□ 1.47
CPSF1-209ENST00000532725 HHIPL1Q96JK4 782 aa24.26■■□□□ 1.47
CPSF1-209ENST00000532725 PIH1D3Q9NQM4 214 aaKnown RBP24.26■■□□□ 1.47
CPSF1-209ENST00000532725 NDUFB9Q9Y6M9 179 aa24.26■■□□□ 1.47
CPSF1-209ENST00000532725 ECM29Q5VYK3 1845 aa24.26■■□□□ 1.47
CPSF1-209ENST00000532725 IGSF3O75054 1194 aa24.25■■□□□ 1.47
CPSF1-209ENST00000532725 VEGFBP49765 207 aa24.25■■□□□ 1.47
CPSF1-209ENST00000532725 FKBP1BP68106 108 aa24.25■■□□□ 1.47
CPSF1-209ENST00000532725 TEPSINQ96N21 525 aa24.25■■□□□ 1.47
CPSF1-209ENST00000532725 USP40Q9NVE5 1235 aa24.25■■□□□ 1.47
CPSF1-209ENST00000532725 GPR75-ASB3A0A0A6YYF3 556 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 LDHCP07864 332 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 ATP5JP18859 108 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 HUNKP57058 714 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 GSTO1P78417 241 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 NBPF12Q5TAG4 269 aaPredicted RBP24.24■■□□□ 1.47
CPSF1-209ENST00000532725 JMYQ8N9B5 988 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 ANTXR1Q9H6X2 564 aa24.24■■□□□ 1.47
CPSF1-209ENST00000532725 NF2P35240 595 aa24.23■■□□□ 1.47
CPSF1-209ENST00000532725 TNNI2P48788 182 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms