RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 DHX58Q96C10 678 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 METP08581 1390 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 GCC2Q8IWJ2 1684 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 TRIM75PA6NK02 468 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 SPECC1Q5M775 1068 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 INCENPQ9NQS7 918 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 KRT2P35908 639 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 PNMA6EA0A0J9YXQ4 647 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 RUFY3Q7L099 469 aa16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 NAP1L4Q99733 375 aaKnown RBP16.8■□□□□ 0.28
PCDHA9-202ENST00000532602 PLXNC1O60486 1568 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 EIF4A1P60842 406 aaKnown RBP16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 PRPF4BQ13523 1007 aaKnown RBP16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 CTDSPL2Q05D32 466 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 AKNAD1Q5T1N1 836 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 TTC16Q8NEE8 873 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 SHTN1A0MZ66 631 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 CHL1O00533 1208 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 C8orf34Q49A92 452 aa16.79■□□□□ 0.28
PCDHA9-202ENST00000532602 FSD2A1L4K1 749 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 HLTFQ14527 1009 aaKnown RBP eCLIP16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 UIMC1Q96RL1 719 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 PTPRTO14522 1441 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 LARGE2Q8N3Y3 721 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 FAM227BQ96M60 508 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 TMEM94Q12767 1356 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 KDM6BO15054 1643 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 PRDM1O75626 825 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 MRPS27Q92552 414 aaKnown RBP16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 FAM212AQ96EL1 285 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 BABAM1Q9NWV8 329 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 RAD50Q92878 1312 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 ADCY5O95622 1261 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 ASIC1P78348 528 aa16.78■□□□□ 0.28
PCDHA9-202ENST00000532602 MAST3O60307 1309 aa16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 SEC24BO95487 1268 aa16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 PARP1P09874 1014 aaKnown RBP16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 ZSCAN23Q3MJ62 389 aa16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 TSNARE1Q96NA8 513 aa16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 PLCD4Q9BRC7 762 aa16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 SSX2IPQ9Y2D8 614 aa16.77■□□□□ 0.28
PCDHA9-202ENST00000532602 PTPDC1A2A3K4 754 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 PHKG2P15735 406 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 PRPHP41219 470 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 HS2ST1Q7LGA3 356 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 UVSSAQ2YD98 709 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 CERS3Q8IU89 383 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 HOOK2Q96ED9 719 aa16.77■□□□□ 0.27
PCDHA9-202ENST00000532602 CYLC1P35663 651 aaPredicted RBP16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 KCNQ4P56696 695 aa16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 TTC12Q9H892 705 aaPredicted RBP16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 EFCAB6Q5THR3 1501 aa16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 GCKRQ14397 625 aa16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 HELLSQ9NRZ9 838 aa16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 ARHGEF5Q12774 1597 aa16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 APBB1IPQ7Z5R6 666 aaPredicted RBP16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 TTLL7Q6ZT98 887 aa16.76■□□□□ 0.27
PCDHA9-202ENST00000532602 F13A1P00488 732 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 GIGYF2Q6Y7W6 1299 aaKnown RBP16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 HOMER2Q9NSB8 354 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 ABCA8O94911 1581 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 ANO6Q4KMQ2 910 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 ZMYM4Q5VZL5 1548 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 KIAA0753Q2KHM9 967 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 DHX32Q7L7V1 743 aaKnown RBP16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 BBXQ8WY36 941 aaPredicted RBP16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 QTRT2Q9H974 415 aaKnown RBP16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 PLEKHG3A1L390 1219 aa16.75■□□□□ 0.27
PCDHA9-202ENST00000532602 LMAN1P49257 510 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 DPH6Q7L8W6 267 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 IKBKGQ9Y6K9 419 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 FAM13AO94988 1023 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 ZAP70P43403 619 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 IL17REQ8NFR9 667 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 RBM28Q9NW13 759 aaKnown RBP16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 HOXB7P09629 217 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 PDE6BP35913 854 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 KDM5DQ9BY66 1539 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 GRIPAP1Q4V328 841 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 MSANTD4Q8NCY6 345 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 PICK1Q9NRD5 415 aa16.74■□□□□ 0.27
PCDHA9-202ENST00000532602 KIF1BO60333 1816 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 NPHP4O75161 1426 aaPredicted RBP16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 ZNF174Q15697 407 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 C16orf45Q96MC5 204 aaPredicted RBP16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 SLC27A2O14975 620 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 GPAA1O43292 621 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 BRDTQ58F21 947 aaPredicted RBP16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 MAPKAPK5Q8IW41 473 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 SPATA5Q8NB90 893 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 TGFBRAP1Q8WUH2 860 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 JADE2Q9NQC1 790 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 MYL10Q9BUA6 226 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 NEURL1BA8MQ27 555 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 ERVV-2B6SEH9 535 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 SUPT20HQ8NEM7 779 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 USP26Q9BXU7 913 aa16.73■□□□□ 0.27
PCDHA9-202ENST00000532602 CHMP2AO43633 222 aa16.72■□□□□ 0.27
PCDHA9-202ENST00000532602 KLHL40Q2TBA0 621 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms