RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 TXNRD3Q86VQ6 643 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 RGS22Q8NE09 1264 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 FOXD4L4Q8WXT5 416 aaPredicted RBP8.22□□□□□ -1.09
CD44-231ENST00000531110 TMEM39AQ9NV64 488 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 USP21Q9UK80 565 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 MEGF11A6BM72 1044 aa8.21□□□□□ -1.1
CD44-231ENST00000531110 F8W735 103 aaPredicted RBP8.21□□□□□ -1.1
CD44-231ENST00000531110 ZNF16P17020 682 aaPredicted RBP8.21□□□□□ -1.1
CD44-231ENST00000531110 ZEB1P37275 1124 aaPredicted RBP8.21□□□□□ -1.1
CD44-231ENST00000531110 ST13P50502 369 aaKnown RBP8.21□□□□□ -1.1
CD44-231ENST00000531110 HNRNPUQ00839 825 aaKnown RBP eCLIP8.21□□□□□ -1.1
CD44-231ENST00000531110 FAAP100Q0VG06 881 aa8.21□□□□□ -1.1
CD44-231ENST00000531110 DUOXA2Q1HG44 320 aa8.21□□□□□ -1.1
CD44-231ENST00000531110 CRELD1Q96HD1 420 aa8.21□□□□□ -1.1
CD44-231ENST00000531110 AKTIPQ9H8T0 292 aa8.21□□□□□ -1.1
CD44-231ENST00000531110 KCNK4Q9NYG8 393 aa8.21□□□□□ -1.1
CD44-231ENST00000531110 GSTM4Q03013 218 aa8.2□□□□□ -1.1
CD44-231ENST00000531110 SCARA3Q6AZY7 606 aa8.2□□□□□ -1.1
CD44-231ENST00000531110 MRS2Q9HD23 443 aa8.2□□□□□ -1.1
CD44-231ENST00000531110 AKAP2Q9Y2D5 859 aa8.2□□□□□ -1.1
CD44-231ENST00000531110 SYNGAP1Q96PV0 1343 aa8.2□□□□□ -1.1
CD44-231ENST00000531110 LOC100289279A0A1B0GTE1 492 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 MRPL58Q14197 206 aaKnown RBP8.19□□□□□ -1.1
CD44-231ENST00000531110 HGSNATQ68CP4 663 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 KIAA1211Q6ZU35 1233 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 SV2BQ7L1I2 683 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 WFDC12Q8WWY7 111 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 NECAB3Q96P71 396 aaPredicted RBP8.19□□□□□ -1.1
CD44-231ENST00000531110 TRIM56Q9BRZ2 755 aaKnown RBP8.19□□□□□ -1.1
CD44-231ENST00000531110 RNF208Q9H0X6 261 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 SUGCTQ9HAC7 445 aa8.19□□□□□ -1.1
CD44-231ENST00000531110 GATA4P43694 442 aa8.18□□□□□ -1.1
CD44-231ENST00000531110 NLRP12P59046 1061 aa8.18□□□□□ -1.1
CD44-231ENST00000531110 TAGLNQ01995 201 aaKnown RBP8.18□□□□□ -1.1
CD44-231ENST00000531110 ACAD11Q709F0 780 aa8.18□□□□□ -1.1
CD44-231ENST00000531110 CEP41Q9BYV8 373 aa8.18□□□□□ -1.1
CD44-231ENST00000531110 GPN3Q9UHW5 284 aaPredicted RBP8.18□□□□□ -1.1
CD44-231ENST00000531110 SAMM50Q9Y512 469 aa8.18□□□□□ -1.1
CD44-231ENST00000531110 MSTNO14793 375 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 DDX3YO15523 660 aaKnown RBP8.17□□□□□ -1.1
CD44-231ENST00000531110 WISP1O95388 367 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 PROCP04070 461 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 NME2P22392 152 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 VAMP1P23763 118 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 NOS3P29474 1203 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 POU4F3Q15319 338 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 UVSSAQ2YD98 709 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 ANKRD34AQ69YU3 496 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 DZIP1LQ8IYY4 767 aaKnown RBP8.17□□□□□ -1.1
CD44-231ENST00000531110 UBASH3BQ8TF42 649 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 SPOCK3Q9BQ16 436 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 CORO1BQ9BR76 489 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 NOC4LQ9BVI4 516 aaKnown RBP8.17□□□□□ -1.1
CD44-231ENST00000531110 SSBP4Q9BWG4 385 aaPredicted RBP8.17□□□□□ -1.1
CD44-231ENST00000531110 EMILIN2Q9BXX0 1053 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 TMPRSS13Q9BYE2 586 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 KRT82Q9NSB4 513 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 RNF19AQ9NV58 838 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 USP31Q70CQ4 1352 aa8.17□□□□□ -1.1
CD44-231ENST00000531110 ENC1O14682 589 aa8.16□□□□□ -1.1
CD44-231ENST00000531110 EXOSC6Q5RKV6 272 aaKnown RBP8.16□□□□□ -1.1
CD44-231ENST00000531110 ERICH6BQ5W0A0 696 aa8.16□□□□□ -1.1
CD44-231ENST00000531110 RUSC1Q9BVN2 902 aa8.16□□□□□ -1.1
CD44-231ENST00000531110 CTSHP09668 335 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 RLBP1P12271 317 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 MAOBP27338 520 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 TAF1CQ15572 869 aaPredicted RBP8.15□□□□□ -1.1
CD44-231ENST00000531110 PDZD3Q86UT5 571 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 SMG8Q8ND04 991 aaKnown RBP8.15□□□□□ -1.1
CD44-231ENST00000531110 USP26Q9BXU7 913 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 CYP4F12Q9HCS2 524 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 PODXL2Q9NZ53 605 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 VTI1BQ9UEU0 232 aa8.15□□□□□ -1.1
CD44-231ENST00000531110 TTF2Q9UNY4 1162 aaKnown RBP8.15□□□□□ -1.1
CD44-231ENST00000531110 GSTP1P09211 210 aaKnown RBP8.14□□□□□ -1.11
CD44-231ENST00000531110 ARNTP27540 789 aa8.14□□□□□ -1.11
CD44-231ENST00000531110 IREB2P48200 963 aaKnown RBP8.14□□□□□ -1.11
CD44-231ENST00000531110 TPTE2Q6XPS3 522 aa8.14□□□□□ -1.11
CD44-231ENST00000531110 SULF2Q8IWU5 870 aa8.14□□□□□ -1.11
CD44-231ENST00000531110 FAM161BQ96MY7 647 aa8.14□□□□□ -1.11
CD44-231ENST00000531110 CACNA2D2Q9NY47 1150 aa8.14□□□□□ -1.11
CD44-231ENST00000531110 RPS26P62854 115 aaKnown RBP8.13□□□□□ -1.11
CD44-231ENST00000531110 ZNF252P-AS1Q0IIN9 211 aa8.13□□□□□ -1.11
CD44-231ENST00000531110 LRRC14Q15048 493 aa8.13□□□□□ -1.11
CD44-231ENST00000531110 GPAT2Q6NUI2 795 aa8.13□□□□□ -1.11
CD44-231ENST00000531110 CYP8B1Q9UNU6 501 aa8.13□□□□□ -1.11
CD44-231ENST00000531110 CLSPNQ9HAW4 1339 aa8.12□□□□□ -1.11
CD44-231ENST00000531110 TIAF1O95411 115 aa8.12□□□□□ -1.11
CD44-231ENST00000531110 NUTM2GQ5VZR2 741 aa8.12□□□□□ -1.11
CD44-231ENST00000531110 FAM46AQ96IP4 442 aaKnown RBP8.12□□□□□ -1.11
CD44-231ENST00000531110 HIF3AQ9Y2N7 669 aa8.12□□□□□ -1.11
CD44-231ENST00000531110 DLGAP3O95886 979 aa8.11□□□□□ -1.11
CD44-231ENST00000531110 BMP6P22004 513 aa8.11□□□□□ -1.11
CD44-231ENST00000531110 CCDC85BQ15834 202 aaPredicted RBP8.11□□□□□ -1.11
CD44-231ENST00000531110 FDX2Q6P4F2 183 aa8.11□□□□□ -1.11
CD44-231ENST00000531110 MEGF10Q96KG7 1140 aa8.11□□□□□ -1.11
CD44-231ENST00000531110 TRIM37O94972 964 aa8.1□□□□□ -1.11
CD44-231ENST00000531110 ALX3O95076 343 aa8.1□□□□□ -1.11
CD44-231ENST00000531110 H2AFB1P0C5Y9 115 aa8.1□□□□□ -1.11
CD44-231ENST00000531110 H2AFB2P0C5Z0 115 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms