RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 FAM227BQ96M60 508 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 GUCY1B3Q02153 619 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 NOA1Q8NC60 698 aaKnown RBP16.18■□□□□ 0.18
PCF11-204ENST00000530660 A1CFQ9NQ94 594 aaKnown RBP16.18■□□□□ 0.18
PCF11-204ENST00000530660 CDC23Q9UJX2 597 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 PCDHA7Q9UN72 937 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 SH3BP1Q9Y3L3 701 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 BPIFA3Q9BQP9 254 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 USP44Q9H0E7 712 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 ODF2LQ9ULJ1 636 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 CPS1P31327 1500 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 GOLGA6L9A6NEM1 432 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 POTEB2H3BUK9 544 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 ACTN3Q08043 901 aaPredicted RBP16.17■□□□□ 0.18
PCF11-204ENST00000530660 POTEDQ86YR6 584 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 MRPS27Q92552 414 aaKnown RBP16.17■□□□□ 0.18
PCF11-204ENST00000530660 RPS6KB1P23443 525 aa16.17■□□□□ 0.18
PCF11-204ENST00000530660 SKAP2O75563 359 aaPredicted RBP16.16■□□□□ 0.18
PCF11-204ENST00000530660 ZNF202O95125 648 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 UBTFL1P0CB47 393 aaPredicted RBP16.16■□□□□ 0.18
PCF11-204ENST00000530660 PSMA5P28066 241 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 PPP1R42Q7Z4L9 355 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 CEP112Q8N8E3 955 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 NEDD4P46934 1319 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 HSP90B1P14625 803 aaKnown RBP16.16■□□□□ 0.18
PCF11-204ENST00000530660 FNTAP49354 379 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 TEX11Q8IYF3 940 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 INTS13Q9NVM9 706 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 SLC3A2P08195 630 aaKnown RBP16.16■□□□□ 0.18
PCF11-204ENST00000530660 GCFC2P16383 781 aaKnown RBP16.16■□□□□ 0.18
PCF11-204ENST00000530660 NLRP12P59046 1061 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 ANKRD1Q15327 319 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 KIF4BQ2VIQ3 1234 aa16.16■□□□□ 0.18
PCF11-204ENST00000530660 CCNHP51946 323 aaPredicted RBP16.15■□□□□ 0.18
PCF11-204ENST00000530660 HSP90AB2PQ58FF8 381 aa16.15■□□□□ 0.18
PCF11-204ENST00000530660 SHOX2O60902 331 aaPredicted RBP16.15■□□□□ 0.18
PCF11-204ENST00000530660 GGCXP38435 758 aa16.15■□□□□ 0.18
PCF11-204ENST00000530660 DDR1Q08345 913 aa16.15■□□□□ 0.18
PCF11-204ENST00000530660 TBC1D8BQ0IIM8 1120 aa16.15■□□□□ 0.18
PCF11-204ENST00000530660 SSH3Q8TE77 659 aa16.15■□□□□ 0.18
PCF11-204ENST00000530660 CHUKO15111 745 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 ZNF569Q5MCW4 686 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 TC2NQ8N9U0 490 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 SEC62Q99442 399 aaKnown RBP16.14■□□□□ 0.17
PCF11-204ENST00000530660 LRRC2Q9BYS8 371 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 CENPHQ9H3R5 247 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 ALKQ9UM73 1620 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 PDE6BP35913 854 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 TRIM6Q9C030 488 aaPredicted RBP16.14■□□□□ 0.17
PCF11-204ENST00000530660 HPCAL4Q9UM19 191 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 KIF3CO14782 793 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 CALRP27797 417 aaKnown RBP16.14■□□□□ 0.17
PCF11-204ENST00000530660 MTHFSDQ2M296 383 aaKnown RBP16.14■□□□□ 0.17
PCF11-204ENST00000530660 PREPLQ4J6C6 727 aaPredicted RBP16.14■□□□□ 0.17
PCF11-204ENST00000530660 MAP4K1Q92918 833 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 GBP3Q9H0R5 595 aa16.14■□□□□ 0.17
PCF11-204ENST00000530660 RBM28Q9NW13 759 aaKnown RBP16.14■□□□□ 0.17
PCF11-204ENST00000530660 SOWAHDA6NJG2 315 aa16.13■□□□□ 0.17
PCF11-204ENST00000530660 STX10O60499 249 aa16.13■□□□□ 0.17
PCF11-204ENST00000530660 AARSP49588 968 aaKnown RBP eCLIP16.13■□□□□ 0.17
PCF11-204ENST00000530660 AKAP17AQ02040 695 aaKnown RBP16.13■□□□□ 0.17
PCF11-204ENST00000530660 IQCA1Q86XH1 822 aa16.13■□□□□ 0.17
PCF11-204ENST00000530660 CNKSR2Q8WXI2 1034 aa16.13■□□□□ 0.17
PCF11-204ENST00000530660 TACO1Q9BSH4 297 aaKnown RBP16.13■□□□□ 0.17
PCF11-204ENST00000530660 FAM76AQ8TAV0 307 aa16.13■□□□□ 0.17
PCF11-204ENST00000530660 ZNF526Q8TF50 670 aaPredicted RBP16.13■□□□□ 0.17
PCF11-204ENST00000530660 CBFA2T2O43439 604 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 CEP57Q86XR8 500 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 ZC3H4Q9UPT8 1303 aaKnown RBP16.12■□□□□ 0.17
PCF11-204ENST00000530660 SHTN1A0MZ66 631 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 CTAGE15A4D2H0 777 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 KLHL33A6NCF5 533 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 WASLO00401 505 aaPredicted RBP16.12■□□□□ 0.17
PCF11-204ENST00000530660 ZMYND10O75800 440 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 CTAGE8P0CG41 777 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 ILDR1Q86SU0 546 aaPredicted RBP16.12■□□□□ 0.17
PCF11-204ENST00000530660 CTAGE6Q86UF2 777 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 CTAGE4Q8IX94 777 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 NMIQ13287 307 aaPredicted RBP16.12■□□□□ 0.17
PCF11-204ENST00000530660 OTUD6BQ8N6M0 293 aa16.12■□□□□ 0.17
PCF11-204ENST00000530660 NUDT16Q96DE0 195 aaKnown RBP16.12■□□□□ 0.17
PCF11-204ENST00000530660 EME2A4GXA9 379 aaPredicted RBP16.11■□□□□ 0.17
PCF11-204ENST00000530660 GLRX3O76003 335 aaKnown RBP16.11■□□□□ 0.17
PCF11-204ENST00000530660 ABL1P00519 1130 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 GNGT1P63211 74 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 NCAPH2Q6IBW4 605 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 GSPT2Q8IYD1 628 aaKnown RBP16.11■□□□□ 0.17
PCF11-204ENST00000530660 XAGE2Q96GT9 111 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 IKBKBO14920 756 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 FBXO31Q5XUX0 539 aaPredicted RBP16.11■□□□□ 0.17
PCF11-204ENST00000530660 CAPS2Q9BXY5 557 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 CHD2O14647 1828 aaKnown RBP16.11■□□□□ 0.17
PCF11-204ENST00000530660 GRIN2DO15399 1336 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 GOLGA6CA6NDK9 693 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 RAPGEF3O95398 923 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 GOLGA6DP0CG33 693 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 CDC5LQ99459 802 aaKnown RBP16.11■□□□□ 0.17
PCF11-204ENST00000530660 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.11■□□□□ 0.17
PCF11-204ENST00000530660 GOLGA6AQ9NYA3 693 aa16.11■□□□□ 0.17
PCF11-204ENST00000530660 KIF5CO60282 957 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms