RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TMEM39AQ9NV64 488 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 TTF2Q9UNY4 1162 aaKnown RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 WISP1O95388 367 aa8.02□□□□□ -1.13
CD44-230ENST00000528922 VAMP1P23763 118 aa8.02□□□□□ -1.13
CD44-230ENST00000528922 TAF1CQ15572 869 aaPredicted RBP8.02□□□□□ -1.13
CD44-230ENST00000528922 PAGE1O75459 146 aa8.01□□□□□ -1.13
CD44-230ENST00000528922 CELA3AP09093 270 aa8.01□□□□□ -1.13
CD44-230ENST00000528922 ALYREFQ86V81 257 aaKnown RBP8.01□□□□□ -1.13
CD44-230ENST00000528922 STK35Q8TDR2 534 aa8.01□□□□□ -1.13
CD44-230ENST00000528922 UBASH3BQ8TF42 649 aa8.01□□□□□ -1.13
CD44-230ENST00000528922 LENG1Q96BZ8 264 aaPredicted RBP8.01□□□□□ -1.13
CD44-230ENST00000528922 CEP44Q9C0F1 390 aa8.01□□□□□ -1.13
CD44-230ENST00000528922 CCDC180Q9P1Z9 1646 aa8□□□□□ -1.13
CD44-230ENST00000528922 ECEL1O95672 775 aa8□□□□□ -1.13
CD44-230ENST00000528922 DLGAP3O95886 979 aa8□□□□□ -1.13
CD44-230ENST00000528922 RECKO95980 971 aa8□□□□□ -1.13
CD44-230ENST00000528922 ITGAEP38570 1179 aa8□□□□□ -1.13
CD44-230ENST00000528922 ST13P50502 369 aaKnown RBP8□□□□□ -1.13
CD44-230ENST00000528922 PPP2R3AQ06190 1150 aa8□□□□□ -1.13
CD44-230ENST00000528922 BCL11AQ9H165 835 aa8□□□□□ -1.13
CD44-230ENST00000528922 LOC100289279A0A1B0GTE1 492 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 APBA3O96018 575 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 CTSBP07858 339 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 MAOBP27338 520 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 CCDC85BQ15834 202 aaPredicted RBP7.99□□□□□ -1.13
CD44-230ENST00000528922 TSNAXIP1Q2TAA8 658 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 KIAA1211Q6ZU35 1233 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 SV2BQ7L1I2 683 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 TMEM87AQ8NBN3 555 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 DDX54Q8TDD1 881 aaKnown RBP7.99□□□□□ -1.13
CD44-230ENST00000528922 DCAF11Q8TEB1 546 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 USP26Q9BXU7 913 aa7.99□□□□□ -1.13
CD44-230ENST00000528922 CYP11A1P05108 521 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 BMP6P22004 513 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 CHRNA4P43681 627 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 POU4F3Q15319 338 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 DUOXA2Q1HG44 320 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 RASIP1Q5U651 963 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 CD163Q86VB7 1156 aa7.98□□□□□ -1.13
CD44-230ENST00000528922 MRPL18Q9H0U6 180 aaKnown RBP7.98□□□□□ -1.13
CD44-230ENST00000528922 C9orf172C9J069 976 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 ALX3O95076 343 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 GDF11O95390 407 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 ITGB2P05107 769 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 NME2P22392 152 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 ARNTP27540 789 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 AP3B2Q13367 1082 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.97□□□□□ -1.13
CD44-230ENST00000528922 PDZD3Q86UT5 571 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 SULF2Q8IWU5 870 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 TMEM130Q8N3G9 435 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 NACC1Q96RE7 527 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 USP21Q9UK80 565 aa7.97□□□□□ -1.13
CD44-230ENST00000528922 C1QTNF9BB2RNN3 333 aa7.96□□□□□ -1.14
CD44-230ENST00000528922 F8W735 103 aaPredicted RBP7.96□□□□□ -1.14
CD44-230ENST00000528922 EIF4EBP3O60516 100 aaPredicted RBP7.96□□□□□ -1.14
CD44-230ENST00000528922 ADGRE1Q14246 886 aa7.96□□□□□ -1.14
CD44-230ENST00000528922 MBTPS1Q14703 1052 aa7.96□□□□□ -1.14
CD44-230ENST00000528922 ACAD11Q709F0 780 aa7.96□□□□□ -1.14
CD44-230ENST00000528922 AGGF1Q8N302 714 aaeCLIP7.96□□□□□ -1.14
CD44-230ENST00000528922 TMEM151AQ8N4L1 468 aa7.96□□□□□ -1.14
CD44-230ENST00000528922 GRIN3AQ8TCU5 1115 aa7.96□□□□□ -1.14
CD44-230ENST00000528922 NOC4LQ9BVI4 516 aaKnown RBP7.96□□□□□ -1.14
CD44-230ENST00000528922 ZC3H12CQ9C0D7 883 aaKnown RBP7.96□□□□□ -1.14
CD44-230ENST00000528922 GSTP1P09211 210 aaKnown RBP7.95□□□□□ -1.14
CD44-230ENST00000528922 MAP3K11Q16584 847 aa7.95□□□□□ -1.14
CD44-230ENST00000528922 MPRIPQ6WCQ1 1025 aa7.95□□□□□ -1.14
CD44-230ENST00000528922 WFDC12Q8WWY7 111 aa7.95□□□□□ -1.14
CD44-230ENST00000528922 CORO1BQ9BR76 489 aa7.95□□□□□ -1.14
CD44-230ENST00000528922 NOS3P29474 1203 aa7.94□□□□□ -1.14
CD44-230ENST00000528922 IREB2P48200 963 aaKnown RBP7.94□□□□□ -1.14
CD44-230ENST00000528922 NRG1Q02297 640 aaPredicted RBP7.94□□□□□ -1.14
CD44-230ENST00000528922 ZNF252P-AS1Q0IIN9 211 aa7.94□□□□□ -1.14
CD44-230ENST00000528922 PCNX4Q63HM2 1172 aa7.94□□□□□ -1.14
CD44-230ENST00000528922 TMPRSS13Q9BYE2 586 aa7.94□□□□□ -1.14
CD44-230ENST00000528922 CCDC86Q9H6F5 360 aaKnown RBP7.94□□□□□ -1.14
CD44-230ENST00000528922 AKTIPQ9H8T0 292 aa7.94□□□□□ -1.14
CD44-230ENST00000528922 MEGF11A6BM72 1044 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 F6X3S4 739 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 FANCCQ00597 558 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 TTBK2Q6IQ55 1244 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 KCNB2Q92953 911 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 RUSC1Q9BVN2 902 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 CBX8Q9HC52 389 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 COPRSQ9NQ92 184 aa7.93□□□□□ -1.14
CD44-230ENST00000528922 ZNF862O60290 1169 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 LIG1P18858 919 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 LIG3P49916 1009 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 PLA2G4EQ3MJ16 856 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 EXOSC6Q5RKV6 272 aaKnown RBP7.92□□□□□ -1.14
CD44-230ENST00000528922 ERMP1Q7Z2K6 904 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 WDR89Q96FK6 387 aaPredicted RBP7.92□□□□□ -1.14
CD44-230ENST00000528922 RSRP1Q9BUV0 290 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 EMILIN2Q9BXX0 1053 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 RNF208Q9H0X6 261 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 SAMM50Q9Y512 469 aa7.92□□□□□ -1.14
CD44-230ENST00000528922 SCAMP3O14828 347 aaKnown RBP7.91□□□□□ -1.14
CD44-230ENST00000528922 ZNF76P36508 570 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 PDE3AQ14432 1141 aa7.91□□□□□ -1.14
CD44-230ENST00000528922 MAP1SQ66K74 1059 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms