RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 SEMA3EO15041 775 aa11.91□□□□□ -0.5
CHD7-208ENST00000528280 TNNI2P48788 182 aa11.91□□□□□ -0.5
CHD7-208ENST00000528280 ATP2B3Q16720 1220 aa11.91□□□□□ -0.5
CHD7-208ENST00000528280 FTSJ3Q8IY81 847 aaKnown RBP11.91□□□□□ -0.5
CHD7-208ENST00000528280 SIL1Q9H173 461 aa11.91□□□□□ -0.5
CHD7-208ENST00000528280 COL1A1P02452 1464 aaPredicted RBP11.9□□□□□ -0.5
CHD7-208ENST00000528280 FAM155AB1AL88 458 aaPredicted RBP11.9□□□□□ -0.5
CHD7-208ENST00000528280 CHAF1AQ13111 956 aaPredicted RBP11.9□□□□□ -0.5
CHD7-208ENST00000528280 G3BP1Q13283 466 aaKnown RBP eCLIP11.9□□□□□ -0.59e-7■□□□□ 8
CHD7-208ENST00000528280 DZIP1LQ8IYY4 767 aaKnown RBP11.9□□□□□ -0.5
CHD7-208ENST00000528280 TEKT1Q969V4 418 aa11.9□□□□□ -0.5
CHD7-208ENST00000528280 CLUAP1Q96AJ1 413 aa11.9□□□□□ -0.5
CHD7-208ENST00000528280 ZIC5Q96T25 663 aa11.9□□□□□ -0.5
CHD7-208ENST00000528280 DENND2AQ9ULE3 1009 aa11.9□□□□□ -0.5
CHD7-208ENST00000528280 JAG2Q9Y219 1238 aa11.9□□□□□ -0.5
CHD7-208ENST00000528280 UBE2Q2LH0YL09 131 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 SLC10A3P09131 477 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 CRKP46108 304 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 KIF23Q02241 960 aaPredicted RBP11.89□□□□□ -0.51
CHD7-208ENST00000528280 PRAMEF18Q5VWM3 479 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 HHIPL2Q6UWX4 724 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 ZGPATQ8N5A5 531 aaKnown RBP11.89□□□□□ -0.51
CHD7-208ENST00000528280 HOOK2Q96ED9 719 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 VEZTQ9HBM0 779 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 SAGE1Q9NXZ1 904 aa11.89□□□□□ -0.51
CHD7-208ENST00000528280 IQSEC3Q9UPP2 1182 aaPredicted RBP11.89□□□□□ -0.51
CHD7-208ENST00000528280 INHBEP58166 350 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 SPDYE2Q495Y8 402 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 FKBP1CQ5VVH2 108 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 SLF2Q8IX21 1173 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 TMEM57Q8N5G2 664 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 SLC10A4Q96EP9 437 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 ZDHHC15Q96MV8 337 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 CHMP4BQ9H444 224 aaKnown RBP11.88□□□□□ -0.51
CHD7-208ENST00000528280 TMOD2Q9NZR1 351 aa11.88□□□□□ -0.51
CHD7-208ENST00000528280 ZNF70Q9UC06 446 aaPredicted RBP11.88□□□□□ -0.51
CHD7-208ENST00000528280 A0A1B0GUL6 1792 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 CLRN2A0PK11 232 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 IREB2P48200 963 aaKnown RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 ATP8B2P98198 1209 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 RASA3Q14644 834 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 MVPQ14764 893 aaKnown RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 MAP3K11Q16584 847 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 LDLRAD1Q5T700 205 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 SPTY2D1Q68D10 685 aaPredicted RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 CSRNP1Q96S65 589 aa11.87□□□□□ -0.51
CHD7-208ENST00000528280 TDRD3Q9H7E2 651 aaKnown RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 ANGEL1Q9UNK9 670 aaKnown RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 SCAF8Q9UPN6 1271 aaKnown RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 PA2G4Q9UQ80 394 aaKnown RBP11.87□□□□□ -0.51
CHD7-208ENST00000528280 SALL1Q9NSC2 1324 aa11.86□□□□□ -0.51
CHD7-208ENST00000528280 ZBTB7BO15156 539 aaPredicted RBP11.86□□□□□ -0.51
CHD7-208ENST00000528280 LDHBP07195 334 aaKnown RBP11.86□□□□□ -0.51
CHD7-208ENST00000528280 TIMM10P62072 90 aa11.86□□□□□ -0.51
CHD7-208ENST00000528280 SREBF2Q12772 1141 aa11.86□□□□□ -0.51
CHD7-208ENST00000528280 GORABQ5T7V8 394 aa11.86□□□□□ -0.51
CHD7-208ENST00000528280 CTU1Q7Z7A3 348 aaKnown RBP11.86□□□□□ -0.51
CHD7-208ENST00000528280 RASAL3Q86YV0 1011 aa11.86□□□□□ -0.51
CHD7-208ENST00000528280 PAPPA2Q9BXP8 1791 aa11.86□□□□□ -0.51
CHD7-208ENST00000528280 ZNF646O15015 1829 aaPredicted RBP11.86□□□□□ -0.51
CHD7-208ENST00000528280 TM4SF4P48230 202 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 TFCP2Q12800 502 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 CCDC102BQ68D86 513 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 FAM83AQ86UY5 434 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 ITPRIPQ8IWB1 547 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 NEUROD6Q96NK8 337 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 GPR108Q9NPR9 543 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 RNF186Q9NXI6 227 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 HPS5Q9UPZ3 1129 aa11.85□□□□□ -0.51
CHD7-208ENST00000528280 PDS5AQ29RF7 1337 aaKnown RBP11.85□□□□□ -0.51
CHD7-208ENST00000528280 A0A1B0GUL7 405 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 IGSF3O75054 1194 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 USP2O75604 605 aaPredicted RBP11.84□□□□□ -0.51
CHD7-208ENST00000528280 ALDH1A1P00352 501 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 ZBTB48P10074 688 aaPredicted RBP11.84□□□□□ -0.51
CHD7-208ENST00000528280 FXR1P51114 621 aaKnown RBP eCLIP11.84□□□□□ -0.51
CHD7-208ENST00000528280 OS9Q13438 667 aaPredicted RBP11.84□□□□□ -0.51
CHD7-208ENST00000528280 PRKG1Q13976 671 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 NBPF12Q5TAG4 269 aaPredicted RBP11.84□□□□□ -0.51
CHD7-208ENST00000528280 MOB2Q70IA6 237 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 ANKRD13AQ8IZ07 590 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 SSH3Q8TE77 659 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 XAGE2Q96GT9 111 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 PCDHAC2Q9Y5I4 1007 aa11.84□□□□□ -0.51
CHD7-208ENST00000528280 PNMA6EA0A0J9YXQ4 647 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 MANSC4A6NHS7 340 aaPredicted RBP11.83□□□□□ -0.52
CHD7-208ENST00000528280 TCP10L2B9ZVM9 353 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 SURF6O75683 361 aaKnown RBP11.83□□□□□ -0.52
CHD7-208ENST00000528280 TRPA1O75762 1119 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 UQCRFS1P1P0C7P4 283 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 PHKA1P46020 1223 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 POLA2Q14181 598 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 SPRYD7Q5W111 196 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 OTUD7BQ6GQQ9 843 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 APOBEC3HQ6NTF7 200 aaKnown RBP11.83□□□□□ -0.52
CHD7-208ENST00000528280 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.83□□□□□ -0.52
CHD7-208ENST00000528280 TNNQ9UQP3 1299 aa11.83□□□□□ -0.52
CHD7-208ENST00000528280 MAP4K4O95819 1239 aaPredicted RBP11.82□□□□□ -0.52
CHD7-208ENST00000528280 LDHCP07864 332 aa11.82□□□□□ -0.52
CHD7-208ENST00000528280 MAP3K9P80192 1104 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms