RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ZNF521Q96K83 1311 aa13.36□□□□□ -0.27
CPSF1-203ENST00000527916 FKBP5Q13451 457 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-203ENST00000527916 GCKRQ14397 625 aa13.35□□□□□ -0.27
CPSF1-203ENST00000527916 C15orf52Q6ZUT6 534 aaKnown RBP13.35□□□□□ -0.27
CPSF1-203ENST00000527916 DNAAF4Q8WXU2 420 aa13.35□□□□□ -0.27
CPSF1-203ENST00000527916 HTATIP2Q9BUP3 242 aa13.35□□□□□ -0.27
CPSF1-203ENST00000527916 PLA2G12BQ9BX93 195 aa13.35□□□□□ -0.27
CPSF1-203ENST00000527916 ZCCHC17Q9NP64 241 aaKnown RBP13.35□□□□□ -0.27
CPSF1-203ENST00000527916 NR2E3Q9Y5X4 410 aa13.35□□□□□ -0.27
CPSF1-203ENST00000527916 TLR2O60603 784 aa13.34□□□□□ -0.27
CPSF1-203ENST00000527916 IL1R1P14778 569 aa13.34□□□□□ -0.27
CPSF1-203ENST00000527916 TNNI2P48788 182 aa13.34□□□□□ -0.27
CPSF1-203ENST00000527916 MAP3K9P80192 1104 aa13.34□□□□□ -0.27
CPSF1-203ENST00000527916 LACTBP83111 547 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-203ENST00000527916 VGLL4Q14135 290 aa13.34□□□□□ -0.27
CPSF1-203ENST00000527916 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-203ENST00000527916 FAM43AQ8N2R8 423 aa13.34□□□□□ -0.27
CPSF1-203ENST00000527916 LAMA3Q16787 3333 aa13.33□□□□□ -0.28
CPSF1-203ENST00000527916 ANKRD18BA2A2Z9 1011 aa13.33□□□□□ -0.28
CPSF1-203ENST00000527916 CETPP11597 493 aa13.33□□□□□ -0.28
CPSF1-203ENST00000527916 HOXD10P28358 340 aa13.33□□□□□ -0.28
CPSF1-203ENST00000527916 SPDYE2Q495Y8 402 aa13.33□□□□□ -0.28
CPSF1-203ENST00000527916 HELBQ8NG08 1087 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-203ENST00000527916 ZNF70Q9UC06 446 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-203ENST00000527916 OTOFQ9HC10 1997 aa13.32□□□□□ -0.28
CPSF1-203ENST00000527916 TAF5LO75529 589 aa13.32□□□□□ -0.28
CPSF1-203ENST00000527916 CSF1RP07333 972 aa13.32□□□□□ -0.28
CPSF1-203ENST00000527916 CASP7P55210 303 aa13.32□□□□□ -0.28
CPSF1-203ENST00000527916 CNKSR2Q8WXI2 1034 aa13.32□□□□□ -0.28
CPSF1-203ENST00000527916 SERPINA10Q9UK55 444 aa13.32□□□□□ -0.28
CPSF1-203ENST00000527916 SNAP23O00161 211 aa13.31□□□□□ -0.28
CPSF1-203ENST00000527916 IFIT5Q13325 482 aaKnown RBP13.31□□□□□ -0.28
CPSF1-203ENST00000527916 SNAPC2Q13487 334 aa13.31□□□□□ -0.28
CPSF1-203ENST00000527916 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.31□□□□□ -0.28
CPSF1-203ENST00000527916 ARHGAP39Q9C0H5 1083 aa13.31□□□□□ -0.28
CPSF1-203ENST00000527916 TDRD3Q9H7E2 651 aaKnown RBP13.31□□□□□ -0.28
CPSF1-203ENST00000527916 TTF2Q9UNY4 1162 aaKnown RBP13.31□□□□□ -0.28
CPSF1-203ENST00000527916 JAG2Q9Y219 1238 aa13.31□□□□□ -0.28
CPSF1-203ENST00000527916 AOX1Q06278 1338 aa13.31□□□□□ -0.28
CPSF1-203ENST00000527916 IRS2Q9Y4H2 1338 aa13.31□□□□□ -0.28
CPSF1-203ENST00000527916 A0A1W2PPC1 479 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 SPDYE5A6NIY4 337 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 TCP10L2B9ZVM9 353 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 GJB1P08034 283 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 GJA8P48165 433 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 MFSD14BQ5SR56 506 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 BEND3Q5T5X7 828 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 ERO1BQ86YB8 467 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 DZIP1LQ8IYY4 767 aaKnown RBP13.3□□□□□ -0.28
CPSF1-203ENST00000527916 RAET1EQ8TD07 263 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 SHISA4Q96DD7 197 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 HOOK2Q96ED9 719 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 TEPSINQ96N21 525 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 TMEM39BQ9GZU3 492 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 SRRDQ9UH36 339 aa13.3□□□□□ -0.28
CPSF1-203ENST00000527916 BTBD19C9JJ37 291 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 E9PSI1 815 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 GRK4P32298 578 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 PSMC4P43686 418 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 MTFR1Q15390 333 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 TRIM47Q96LD4 638 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 PRO3102Q9H379 93 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 BIN2Q9UBW5 565 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-203ENST00000527916 FAM205AQ6ZU69 1335 aa13.29□□□□□ -0.28
CPSF1-203ENST00000527916 F6X3S4 739 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 CCER2I3L3R5 266 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 FMNL1O95466 1100 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-203ENST00000527916 CCL5P13501 91 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 UBXN2AP68543 259 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 CDAN1Q8IWY9 1227 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 RNF208Q9H0X6 261 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 CHMP3Q9Y3E7 222 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 RIPOR2Q9Y4F9 1068 aa13.28□□□□□ -0.28
CPSF1-203ENST00000527916 IRF6O14896 467 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 ZBTB7BO15156 539 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-203ENST00000527916 PLIN1O60240 522 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 ALDH1L1O75891 902 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 ECM2O94769 699 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-203ENST00000527916 CRKP46108 304 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 MNX1P50219 401 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-203ENST00000527916 FOXO4P98177 505 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 SLFN5Q08AF3 891 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 PPIL2Q13356 520 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 TAF7LQ5H9L4 462 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 C17orf99Q6UX52 265 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 UBE2Q1Q7Z7E8 422 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 WRNIP1Q96S55 665 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 TMOD2Q9NZR1 351 aa13.27□□□□□ -0.29
CPSF1-203ENST00000527916 GRM8O00222 908 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 EVI5O60447 810 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 FARP2O94887 1054 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-203ENST00000527916 CAPN2P17655 700 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 OSBPP22059 807 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 HIBADHP31937 336 aaKnown RBP13.26□□□□□ -0.29
CPSF1-203ENST00000527916 CCDC57Q2TAC2 916 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 DCAF15Q66K64 600 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 LDHAL6AQ6ZMR3 332 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 MYPNQ86TC9 1320 aa13.26□□□□□ -0.29
CPSF1-203ENST00000527916 TDRD7Q8NHU6 1098 aaKnown RBP13.26□□□□□ -0.29
CPSF1-203ENST00000527916 CNNM1Q9NRU3 951 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms