RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 OSBP2Q969R2 916 aa22.53■■□□□ 1.2
VPS28-207ENST00000526977 PSMD1Q99460 953 aa22.53■■□□□ 1.2
VPS28-207ENST00000526977 WWC3Q9ULE0 1092 aa22.53■■□□□ 1.2
VPS28-207ENST00000526977 KIAA1551Q9HCM1 1747 aa22.52■■□□□ 1.2
VPS28-207ENST00000526977 PODNQ7Z5L7 613 aa22.52■■□□□ 1.2
VPS28-207ENST00000526977 MAGEB6Q8N7X4 407 aa22.52■■□□□ 1.2
VPS28-207ENST00000526977 TTC14Q96N46 770 aa22.52■■□□□ 1.2
VPS28-207ENST00000526977 RAI14Q9P0K7 980 aa22.52■■□□□ 1.2
VPS28-207ENST00000526977 ZNF532Q9HCE3 1301 aa22.52■■□□□ 1.2
VPS28-207ENST00000526977 TCRBV5S4A2TA0A5A2 114 aa22.52■■□□□ 1.19
VPS28-207ENST00000526977 SLFNL1Q499Z3 407 aa22.52■■□□□ 1.19
VPS28-207ENST00000526977 CREB3L3Q68CJ9 461 aa22.52■■□□□ 1.19
VPS28-207ENST00000526977 TBC1D22AQ8WUA7 517 aa22.51■■□□□ 1.19
VPS28-207ENST00000526977 VPS33BQ9H267 617 aa22.51■■□□□ 1.19
VPS28-207ENST00000526977 MAST3O60307 1309 aa22.51■■□□□ 1.19
VPS28-207ENST00000526977 KIAA2012Q0VF49 1180 aa22.5■■□□□ 1.19
VPS28-207ENST00000526977 ADCK5Q3MIX3 580 aa22.5■■□□□ 1.19
VPS28-207ENST00000526977 NOL8Q76FK4 1167 aaKnown RBP22.5■■□□□ 1.19
VPS28-207ENST00000526977 TM6SF1Q9BZW5 370 aa22.5■■□□□ 1.19
VPS28-207ENST00000526977 PUS7LQ9H0K6 701 aaKnown RBP22.5■■□□□ 1.19
VPS28-207ENST00000526977 FAM205AQ6ZU69 1335 aa22.5■■□□□ 1.19
VPS28-207ENST00000526977 DOCK2Q92608 1830 aa22.5■■□□□ 1.19
VPS28-207ENST00000526977 SLC27A2O14975 620 aa22.49■■□□□ 1.19
VPS28-207ENST00000526977 ZKSCAN1P17029 563 aaPredicted RBP22.49■■□□□ 1.19
VPS28-207ENST00000526977 CCDC129Q6ZRS4 1044 aa22.49■■□□□ 1.19
VPS28-207ENST00000526977 ZSWIM6Q9HCJ5 1215 aa22.49■■□□□ 1.19
VPS28-207ENST00000526977 MYH13Q9UKX3 1938 aa22.49■■□□□ 1.19
VPS28-207ENST00000526977 MYH7P12883 1935 aa22.49■■□□□ 1.19
VPS28-207ENST00000526977 M0R2C6 588 aa22.48■■□□□ 1.19
VPS28-207ENST00000526977 CASTP20810 708 aaKnown RBP22.48■■□□□ 1.19
VPS28-207ENST00000526977 NUCB2P80303 420 aa22.48■■□□□ 1.19
VPS28-207ENST00000526977 DOK7Q18PE1 504 aa22.48■■□□□ 1.19
VPS28-207ENST00000526977 JAKMIP1Q96N16 626 aaKnown RBP22.48■■□□□ 1.19
VPS28-207ENST00000526977 LDHBP07195 334 aaKnown RBP22.48■■□□□ 1.19
VPS28-207ENST00000526977 CPA1P15085 419 aa22.48■■□□□ 1.19
VPS28-207ENST00000526977 GSE1Q14687 1217 aa22.48■■□□□ 1.19
VPS28-207ENST00000526977 NSUN4Q96CB9 384 aaKnown RBP22.48■■□□□ 1.19
VPS28-207ENST00000526977 INTS4Q96HW7 963 aaKnown RBP22.48■■□□□ 1.19
VPS28-207ENST00000526977 JAG2Q9Y219 1238 aa22.48■■□□□ 1.19
VPS28-207ENST00000526977 AK2P54819 239 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 NAA16Q6N069 864 aaPredicted RBP22.47■■□□□ 1.19
VPS28-207ENST00000526977 DSCC1Q9BVC3 393 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 GPAA1O43292 621 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 CYP7A1P22680 504 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 PRDX5P30044 214 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 GTF2IP78347 998 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 TTLL5Q6EMB2 1281 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 AIDAQ96BJ3 306 aa22.47■■□□□ 1.19
VPS28-207ENST00000526977 MYO5AQ9Y4I1 1855 aaKnown RBP22.46■■□□□ 1.19
VPS28-207ENST00000526977 PPIP5K2O43314 1243 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 MECOMQ03112 1051 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 AOC3Q16853 763 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 CLEC17AQ6ZS10 378 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 GBP4Q96PP9 640 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 BCS1LQ9Y276 419 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 SUGT1Q9Y2Z0 365 aa22.46■■□□□ 1.19
VPS28-207ENST00000526977 HSPD1P10809 573 aaKnown RBP22.45■■□□□ 1.18
VPS28-207ENST00000526977 PKP1Q13835 747 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 MFSD14BQ5SR56 506 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 RNF20Q5VTR2 975 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 RUFY3Q7L099 469 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 DZIP1Q86YF9 867 aaKnown RBP22.45■■□□□ 1.18
VPS28-207ENST00000526977 NLGN2Q8NFZ4 835 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 DBNDD1Q9H9R9 158 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 CYP46A1Q9Y6A2 500 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 BRCA1P38398 1863 aaKnown RBP22.45■■□□□ 1.18
VPS28-207ENST00000526977 ECE2O60344 883 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 TSGA10IPQ3SY00 556 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 VPS53Q5VIR6 699 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 LIMCH1Q9UPQ0 1083 aa22.45■■□□□ 1.18
VPS28-207ENST00000526977 U3KPZ7 1027 aaPredicted RBP22.45■■□□□ 1.18
VPS28-207ENST00000526977 GSTO1P78417 241 aa22.44■■□□□ 1.18
VPS28-207ENST00000526977 PDRG1Q9NUG6 133 aa22.44■■□□□ 1.18
VPS28-207ENST00000526977 DDX11L8A8MPP1 907 aa22.43■■□□□ 1.18
VPS28-207ENST00000526977 STRBPQ96SI9 672 aaKnown RBP22.43■■□□□ 1.18
VPS28-207ENST00000526977 FHDC1Q9C0D6 1143 aaPredicted RBP22.43■■□□□ 1.18
VPS28-207ENST00000526977 TAF6LQ9Y6J9 622 aa22.43■■□□□ 1.18
VPS28-207ENST00000526977 GNAT2P19087 354 aa22.43■■□□□ 1.18
VPS28-207ENST00000526977 STRIP1Q5VSL9 837 aa22.43■■□□□ 1.18
VPS28-207ENST00000526977 ZNF384Q8TF68 577 aa22.43■■□□□ 1.18
VPS28-207ENST00000526977 LARP6Q9BRS8 491 aaKnown RBP22.43■■□□□ 1.18
VPS28-207ENST00000526977 ZDHHC9Q9Y397 364 aa22.43■■□□□ 1.18
VPS28-207ENST00000526977 LDHCP07864 332 aa22.42■■□□□ 1.18
VPS28-207ENST00000526977 PSMA5P28066 241 aa22.42■■□□□ 1.18
VPS28-207ENST00000526977 TAOK3Q9H2K8 898 aa22.42■■□□□ 1.18
VPS28-207ENST00000526977 RPAP1Q9BWH6 1393 aaPredicted RBP22.42■■□□□ 1.18
VPS28-207ENST00000526977 FKBP1AP62942 108 aaKnown RBP22.41■■□□□ 1.18
VPS28-207ENST00000526977 SLF2Q8IX21 1173 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 LARGE2Q8N3Y3 721 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 FBXW7Q969H0 707 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 ZNF277Q9NRM2 450 aaPredicted RBP22.41■■□□□ 1.18
VPS28-207ENST00000526977 CTNNA3Q9UI47 895 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 MAGEB6P1A0A0J9YX57 407 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 MBD4O95243 580 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 ADGRA1Q86SQ6 560 aa22.41■■□□□ 1.18
VPS28-207ENST00000526977 USP17L3A6NCW0 530 aa22.4■■□□□ 1.18
VPS28-207ENST00000526977 USP17L4A6NCW7 530 aa22.4■■□□□ 1.18
VPS28-207ENST00000526977 TRAK2O60296 914 aa22.4■■□□□ 1.18
VPS28-207ENST00000526977 COL9A3Q14050 684 aaPredicted RBP22.4■■□□□ 1.18
VPS28-207ENST00000526977 USP17L1Q7RTZ2 530 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms