RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MANSC4A6NHS7 340 aaPredicted RBP12.61□□□□□ -0.39
VPS28-204ENST00000526054 ZBTB48P10074 688 aaPredicted RBP12.61□□□□□ -0.39
VPS28-204ENST00000526054 GYG1P46976 350 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 TNFAIP1Q13829 316 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 PDE3AQ14432 1141 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 MAP3K11Q16584 847 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 SUPT20HL1Q3ZLR7 823 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 NOM1Q5C9Z4 860 aaKnown RBP12.61□□□□□ -0.39
VPS28-204ENST00000526054 SLC10A4Q96EP9 437 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 CLMNQ96JQ2 1002 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 PRMT6Q96LA8 375 aaPredicted RBP12.61□□□□□ -0.39
VPS28-204ENST00000526054 PUS3Q9BZE2 481 aaKnown RBP12.61□□□□□ -0.39
VPS28-204ENST00000526054 CHMP4BQ9H444 224 aaKnown RBP12.61□□□□□ -0.39
VPS28-204ENST00000526054 HPS5Q9UPZ3 1129 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 AOX1Q06278 1338 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 MROH5Q6ZUA9 1318 aa12.61□□□□□ -0.39
VPS28-204ENST00000526054 ALDH1A1P00352 501 aa12.6□□□□□ -0.39
VPS28-204ENST00000526054 GNAI2P04899 355 aa12.6□□□□□ -0.39
VPS28-204ENST00000526054 HIBADHP31937 336 aaKnown RBP12.6□□□□□ -0.39
VPS28-204ENST00000526054 IREB2P48200 963 aaKnown RBP12.6□□□□□ -0.39
VPS28-204ENST00000526054 RRP1P56182 461 aaKnown RBP12.6□□□□□ -0.39
VPS28-204ENST00000526054 MVPQ14764 893 aaKnown RBP12.6□□□□□ -0.39
VPS28-204ENST00000526054 TDRD7Q8NHU6 1098 aaKnown RBP12.6□□□□□ -0.39
VPS28-204ENST00000526054 WNK4Q96J92 1243 aa12.6□□□□□ -0.39
VPS28-204ENST00000526054 CFHR5Q9BXR6 569 aa12.6□□□□□ -0.39
VPS28-204ENST00000526054 SERPINA10Q9UK55 444 aa12.6□□□□□ -0.39
VPS28-204ENST00000526054 DDX19BQ9UMR2 479 aa12.6□□□□□ -0.39
VPS28-204ENST00000526054 TTF2Q9UNY4 1162 aaKnown RBP12.6□□□□□ -0.39
VPS28-204ENST00000526054 UNCXA6NJT0 531 aa12.59□□□□□ -0.39
VPS28-204ENST00000526054 FKTNO75072 461 aa12.59□□□□□ -0.39
VPS28-204ENST00000526054 RASA3Q14644 834 aa12.59□□□□□ -0.39
VPS28-204ENST00000526054 SPDYE2Q495Y8 402 aa12.59□□□□□ -0.39
VPS28-204ENST00000526054 NBPF12Q5TAG4 269 aaPredicted RBP12.59□□□□□ -0.39
VPS28-204ENST00000526054 VPS37DQ86XT2 251 aa12.59□□□□□ -0.39
VPS28-204ENST00000526054 FAM84BQ96KN1 310 aaPredicted RBP12.59□□□□□ -0.39
VPS28-204ENST00000526054 COG6Q9Y2V7 657 aa12.59□□□□□ -0.39
VPS28-204ENST00000526054 INHBEP58166 350 aa12.58□□□□□ -0.4
VPS28-204ENST00000526054 METTL24Q5JXM2 366 aa12.58□□□□□ -0.4
VPS28-204ENST00000526054 FBXO46Q6PJ61 603 aaPredicted RBP12.58□□□□□ -0.4
VPS28-204ENST00000526054 IFNL1Q8IU54 200 aa12.58□□□□□ -0.4
VPS28-204ENST00000526054 ANKRD13AQ8IZ07 590 aa12.58□□□□□ -0.4
VPS28-204ENST00000526054 R3HDMLQ9H3Y0 253 aa12.58□□□□□ -0.4
VPS28-204ENST00000526054 TDRD3Q9H7E2 651 aaKnown RBP12.58□□□□□ -0.4
VPS28-204ENST00000526054 ZNF70Q9UC06 446 aaPredicted RBP12.58□□□□□ -0.4
VPS28-204ENST00000526054 RIPOR2Q9Y4F9 1068 aa12.58□□□□□ -0.4
VPS28-204ENST00000526054 IGF2BP3O00425 579 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS28-204ENST00000526054 ZBTB7BO15156 539 aaPredicted RBP12.57□□□□□ -0.4
VPS28-204ENST00000526054 FRAT2O75474 233 aaPredicted RBP12.57□□□□□ -0.4
VPS28-204ENST00000526054 CRKP46108 304 aa12.57□□□□□ -0.4
VPS28-204ENST00000526054 CHAF1AQ13111 956 aaPredicted RBP12.57□□□□□ -0.4
VPS28-204ENST00000526054 LRRC24Q50LG9 513 aa12.57□□□□□ -0.4
VPS28-204ENST00000526054 CAVIN4Q5BKX8 364 aa12.57□□□□□ -0.4
VPS28-204ENST00000526054 IQSEC3Q9UPP2 1182 aaPredicted RBP12.57□□□□□ -0.4
VPS28-204ENST00000526054 TCP10L2B9ZVM9 353 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 USP2O75604 605 aaPredicted RBP12.56□□□□□ -0.4
VPS28-204ENST00000526054 PDE8BO95263 885 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 SLC34A2O95436 690 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 TNNI2P48788 182 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 MTX1Q13505 466 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 C20orf194Q5TEA3 1177 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 VGLL2Q8N8G2 317 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 TBC1D22AQ8WUA7 517 aa12.56□□□□□ -0.4
VPS28-204ENST00000526054 SRGAP3O43295 1099 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 GJA5P36382 358 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 RFX5P48382 616 aaPredicted RBP12.55□□□□□ -0.4
VPS28-204ENST00000526054 OTUD7BQ6GQQ9 843 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 FBXO33Q7Z6M2 555 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 CDAN1Q8IWY9 1227 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 KLHDC4Q8TBB5 520 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 OPTNQ96CV9 577 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 TMEM39BQ9GZU3 492 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 C1orf115Q9H7X2 142 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 ELP3Q9H9T3 547 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 FBXO3Q9UK99 471 aa12.55□□□□□ -0.4
VPS28-204ENST00000526054 EYA2O00167 538 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 CRHR2Q13324 411 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 PUM3Q15397 648 aaKnown RBP12.54□□□□□ -0.4
VPS28-204ENST00000526054 GRIK5Q16478 980 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 TEKT1Q969V4 418 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 TEPSINQ96N21 525 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 TMOD2Q9NZR1 351 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 TRIM17Q9Y577 477 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 MAST3O60307 1309 aa12.54□□□□□ -0.4
VPS28-204ENST00000526054 RBBP6Q7Z6E9 1792 aaKnown RBP12.53□□□□□ -0.4
VPS28-204ENST00000526054 CIAO1O76071 339 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 IFIT1P09914 478 aaKnown RBP12.53□□□□□ -0.4
VPS28-204ENST00000526054 BCAMP50895 628 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 HDLBPQ00341 1268 aaKnown RBP12.53□□□□□ -0.4
VPS28-204ENST00000526054 VGLL4Q14135 290 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 OTOP1Q7RTM1 612 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 ERO1AQ96HE7 468 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 COPRSQ9NQ92 184 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 ZBTB40Q9NUA8 1239 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 CSADQ9Y600 493 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 HTTP42858 3142 aa12.53□□□□□ -0.4
VPS28-204ENST00000526054 MKI67P46013 3256 aaKnown RBP12.52□□□□□ -0.41
VPS28-204ENST00000526054 CACNB3P54284 484 aa12.52□□□□□ -0.41
VPS28-204ENST00000526054 ATP8B2P98198 1209 aa12.52□□□□□ -0.41
VPS28-204ENST00000526054 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.52□□□□□ -0.41
VPS28-204ENST00000526054 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.52□□□□□ -0.417e-9■□□□□ 10.3
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms