RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PHTF2Q8N3S3 785 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 NFATC2IPQ8NCF5 419 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 PIGBQ92521 554 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 CNKSR1Q969H4 720 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 IPO9Q96P70 1041 aaKnown RBP6.5□□□□□ -1.37
CD44-218ENST00000525469 TMOD3Q9NYL9 352 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 SMG6Q86US8 1419 aaKnown RBP6.5□□□□□ -1.37
CD44-218ENST00000525469 CDC14CA4D256 554 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 H7C1W4 665 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 HOXC9P31274 260 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 ECE1P42892 770 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 GRM1Q13255 1194 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 DGKZQ13574 1117 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 EML3Q32P44 896 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 TAS1R3Q7RTX0 852 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 USHBP1Q8N6Y0 703 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 ZSCAN1Q8NBB4 408 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 TMC1Q8TDI8 760 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 GCC1Q96CN9 775 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 MCOLN1Q9GZU1 580 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 ZMYND15Q9H091 742 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 RAB6BQ9NRW1 208 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 DYRK1BQ9Y463 629 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 TNRC18O15417 2968 aaPredicted RBP6.49□□□□□ -1.37
CD44-218ENST00000525469 KDM6AO15550 1401 aaPredicted RBP6.49□□□□□ -1.37
CD44-218ENST00000525469 PASKQ96RG2 1323 aa6.49□□□□□ -1.37
CD44-218ENST00000525469 CD163L1Q9NR16 1453 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 RASSF10A6NK89 507 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 SPATA31C2B4DYI2 1134 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 ITPK1Q13572 414 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 EAPPQ56P03 285 aaPredicted RBP6.48□□□□□ -1.37
CD44-218ENST00000525469 NBPF6Q5VWK0 638 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 TMEM214Q6NUQ4 689 aaKnown RBP6.48□□□□□ -1.37
CD44-218ENST00000525469 TTLL6Q8N841 843 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 COG3Q96JB2 828 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 NBPF4Q96M43 638 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 ZSCAN10Q96SZ4 725 aaPredicted RBP6.48□□□□□ -1.37
CD44-218ENST00000525469 GRIP2Q9C0E4 1043 aa6.48□□□□□ -1.37
CD44-218ENST00000525469 TRPM7Q96QT4 1865 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 CA12O43570 354 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 RPS6KA4O75676 772 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 DDNO94850 711 aaPredicted RBP6.47□□□□□ -1.37
CD44-218ENST00000525469 LCE2CQ5TA81 110 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 NBPF10Q6P3W6 841 aaKnown RBP6.47□□□□□ -1.37
CD44-218ENST00000525469 NBPF15Q8N660 670 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 POM121Q96HA1 1249 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 TERF2IPQ9NYB0 399 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 ASAP1Q9ULH1 1129 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 SPG7Q9UQ90 795 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 NOD1Q9Y239 953 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 AFDNP55196 1824 aaKnown RBP6.47□□□□□ -1.37
CD44-218ENST00000525469 MYH14Q7Z406 1995 aaKnown RBP6.47□□□□□ -1.37
CD44-218ENST00000525469 MAP3K19Q56UN5 1328 aa6.47□□□□□ -1.37
CD44-218ENST00000525469 DLEC1Q9Y238 1755 aa6.46□□□□□ -1.37
CD44-218ENST00000525469 CYP27B1O15528 508 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 IL2RAP01589 272 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 SKIP12755 728 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 RHOQP17081 205 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 CENPCQ03188 943 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 TLR1Q15399 786 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 FER1L6Q2WGJ9 1857 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 TAF7LQ5H9L4 462 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 EDC4Q6P2E9 1401 aaKnown RBP6.46□□□□□ -1.38
CD44-218ENST00000525469 RIPOR1Q6ZS17 1223 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 TRIM50Q86XT4 487 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 XAGE2Q96GT9 111 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 CAPNS2Q96L46 248 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 GPR101Q96P66 508 aaPredicted RBP6.46□□□□□ -1.38
CD44-218ENST00000525469 ALG2Q9H553 416 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 TIMMDC1Q9NPL8 285 aa6.46□□□□□ -1.38
CD44-218ENST00000525469 SBNO2Q9Y2G9 1366 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 CACNA1SQ13698 1873 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 A0A1B0GTH6 734 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 H0YIN7 160 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 NEFMP07197 916 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 GDF10P55107 478 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 SOX10P56693 466 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 PDE4CQ08493 712 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 POU4F2Q12837 409 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 HSP90AA2PQ14568 343 aaPredicted RBP6.45□□□□□ -1.38
CD44-218ENST00000525469 PNMA8AQ86V59 439 aaPredicted RBP6.45□□□□□ -1.38
CD44-218ENST00000525469 C2CD5Q86YS7 1000 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 TRIM22Q8IYM9 498 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 CNTROBQ8N137 903 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 VWA5B2Q8N398 1253 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 TRERF1Q96PN7 1200 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 ARID3AQ99856 593 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 TAF1DQ9H5J8 278 aaPredicted RBP6.45□□□□□ -1.38
CD44-218ENST00000525469 CNTNAP4Q9C0A0 1308 aa6.45□□□□□ -1.38
CD44-218ENST00000525469 COL5A3P25940 1745 aaPredicted RBP6.45□□□□□ -1.38
CD44-218ENST00000525469 NFKBIEO00221 500 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 POLRMTO00411 1230 aaKnown RBP6.44□□□□□ -1.38
CD44-218ENST00000525469 MAP2K2P36507 400 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 DDR1Q08345 913 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 RHBDD1Q8TEB9 315 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 ZNF622Q969S3 477 aaKnown RBP eCLIP6.44□□□□□ -1.38
CD44-218ENST00000525469 GAS2L1Q99501 681 aaPredicted RBP6.44□□□□□ -1.38
CD44-218ENST00000525469 COL25A1Q9BXS0 654 aaPredicted RBP6.44□□□□□ -1.38
CD44-218ENST00000525469 ETNK1Q9HBU6 452 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 ATG3Q9NT62 314 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms