RNA–Protein interactions for RNA: ENST00000522802.5

VPS13B-211, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-211ENST00000522802 USP17L15C9J2P7 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L10C9JJH3 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L13C9JLJ4 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L12C9JPN9 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L11C9JVI0 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L21D6R901 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L18D6R9N7 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L22D6RA61 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L17D6RBQ6 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L19D6RCP7 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L20D6RJB6 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 IL2RAP01589 272 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 CHRNA5P30532 468 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 GDF10P55107 478 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 DDR1Q08345 913 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 USP17L24Q0WX57 530 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 DALRD3Q5D0E6 543 aaKnown RBP8.91□□□□□ -0.98
VPS13B-211ENST00000522802 C6orf118Q5T5N4 469 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 CNKSR1Q969H4 720 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 SLC4A9Q96Q91 983 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 INSM2Q96T92 566 aaPredicted RBP8.91□□□□□ -0.98
VPS13B-211ENST00000522802 ESYT1Q9BSJ8 1104 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 RAB6BQ9NRW1 208 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 TMOD3Q9NYL9 352 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 PIM2Q9P1W9 311 aa8.91□□□□□ -0.98
VPS13B-211ENST00000522802 VIRMAQ69YN4 1812 aaKnown RBP8.91□□□□□ -0.98
VPS13B-211ENST00000522802 TNRC18O15417 2968 aaPredicted RBP8.91□□□□□ -0.98
VPS13B-211ENST00000522802 ELOAQ14241 798 aaKnown RBP8.9□□□□□ -0.98
VPS13B-211ENST00000522802 NLGN1Q8N2Q7 840 aa8.9□□□□□ -0.98
VPS13B-211ENST00000522802 TPCN2Q8NHX9 752 aa8.9□□□□□ -0.98
VPS13B-211ENST00000522802 ZNF594Q96JF6 807 aaPredicted RBP8.9□□□□□ -0.98
VPS13B-211ENST00000522802 ATG3Q9NT62 314 aa8.9□□□□□ -0.98
VPS13B-211ENST00000522802 RTCBQ9Y3I0 505 aaKnown RBP8.9□□□□□ -0.98
VPS13B-211ENST00000522802 NRXN2Q9P2S2 1712 aa8.9□□□□□ -0.98
VPS13B-211ENST00000522802 COL11A2P13942 1736 aaPredicted RBP8.89□□□□□ -0.99
VPS13B-211ENST00000522802 CTSOP43234 321 aaPredicted RBP8.89□□□□□ -0.99
VPS13B-211ENST00000522802 RNF144AP50876 292 aaPredicted RBP8.89□□□□□ -0.99
VPS13B-211ENST00000522802 TRAPPC3LQ5T215 181 aa8.89□□□□□ -0.99
VPS13B-211ENST00000522802 ANKMY2Q8IV38 441 aa8.89□□□□□ -0.99
VPS13B-211ENST00000522802 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.89□□□□□ -0.99
VPS13B-211ENST00000522802 GGNBP2Q9H3C7 697 aa8.89□□□□□ -0.99
VPS13B-211ENST00000522802 PARP3Q9Y6F1 533 aa8.89□□□□□ -0.99
VPS13B-211ENST00000522802 DICER1Q9UPY3 1922 aaKnown RBP8.88□□□□□ -0.99
VPS13B-211ENST00000522802 CNTNAP4Q9C0A0 1308 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 M0R2N6 131 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 MEN1O00255 615 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 VEGFAP15692 232 aaPredicted RBP8.88□□□□□ -0.99
VPS13B-211ENST00000522802 GPC1P35052 558 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 CENPCQ03188 943 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 DPYDQ12882 1025 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 NLRP3Q96P20 1036 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 SIN3AQ96ST3 1273 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 ZNF358Q9NW07 568 aa8.88□□□□□ -0.99
VPS13B-211ENST00000522802 SRP68Q9UHB9 627 aaKnown RBP8.88□□□□□ -0.99
VPS13B-211ENST00000522802 CNTNAP1P78357 1384 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 GLTPD2A6NH11 291 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 BACH1O14867 736 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 RFC4P35249 363 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 SEC13P55735 322 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 FOXD4L5Q5VV16 416 aaPredicted RBP8.87□□□□□ -0.99
VPS13B-211ENST00000522802 CARD11Q9BXL7 1154 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 GRIP2Q9C0E4 1043 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 ZMIZ1Q9ULJ6 1067 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 NOVA2Q9UNW9 492 aaKnown RBP8.87□□□□□ -0.99
VPS13B-211ENST00000522802 ANKRD31Q8N7Z5 1873 aa8.87□□□□□ -0.99
VPS13B-211ENST00000522802 USP42Q9H9J4 1324 aaKnown RBP8.86□□□□□ -0.99
VPS13B-211ENST00000522802 FER1L6Q2WGJ9 1857 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 TTLL8A6PVC2 850 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 SFI1A8K8P3 1242 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 FYB1O15117 783 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 PHKG2P15735 406 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 SMTNP53814 917 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 RNF217Q8TC41 542 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 FAM200AQ8TCP9 573 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 KIFC2Q96AC6 838 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 POLMQ9NP87 494 aaPredicted RBP8.86□□□□□ -0.99
VPS13B-211ENST00000522802 PRDM10Q9NQV6 1147 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 SERTAD1Q9UHV2 236 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 SPG7Q9UQ90 795 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 THSD7BQ9C0I4 1608 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 KIF24Q5T7B8 1368 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 CARMIL3Q8ND23 1372 aa8.86□□□□□ -0.99
VPS13B-211ENST00000522802 CACNA1SQ13698 1873 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 NFKBIEO00221 500 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 POLRMTO00411 1230 aaKnown RBP8.85□□□□□ -0.99
VPS13B-211ENST00000522802 RPS6KA4O75676 772 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 LMNB1P20700 586 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 MTFR1Q15390 333 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 ABHD8Q96I13 439 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 TESK2Q96S53 571 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 RBM19Q9Y4C8 960 aaKnown RBP8.85□□□□□ -0.99
VPS13B-211ENST00000522802 TONSLQ96HA7 1378 aa8.85□□□□□ -0.99
VPS13B-211ENST00000522802 LBX1P52954 281 aa8.84□□□□□ -0.99
VPS13B-211ENST00000522802 EPHA4P54764 986 aa8.84□□□□□ -0.99
VPS13B-211ENST00000522802 PUS7Q96PZ0 661 aaKnown RBP8.84□□□□□ -0.99
VPS13B-211ENST00000522802 ADAMTSL1Q8N6G6 1762 aa8.84□□□□□ -1
VPS13B-211ENST00000522802 A6NJY4 79 aa8.83□□□□□ -1
VPS13B-211ENST00000522802 CRKLP46109 303 aaKnown RBP8.83□□□□□ -1
VPS13B-211ENST00000522802 CTCFP49711 727 aaPredicted RBP8.83□□□□□ -1
VPS13B-211ENST00000522802 NEUROD1Q13562 356 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms