RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 EIF1AXP47813 144 aaKnown RBP6.34□□□□□ -1.39
CSMD3-209ENST00000519485 MAP7Q14244 749 aa6.34□□□□□ -1.39
CSMD3-209ENST00000519485 C8orf34Q49A92 452 aa6.34□□□□□ -1.39
CSMD3-209ENST00000519485 HP1BP3Q5SSJ5 553 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-209ENST00000519485 PEAR1Q5VY43 1037 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-209ENST00000519485 DUSP27Q5VZP5 1158 aa6.34□□□□□ -1.39
CSMD3-209ENST00000519485 ALKBH2Q6NS38 261 aa6.34□□□□□ -1.39
CSMD3-209ENST00000519485 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-209ENST00000519485 A6NHS1 94 aa6.33□□□□□ -1.4
CSMD3-209ENST00000519485 FAM170BA6NMN3 283 aa6.33□□□□□ -1.4
CSMD3-209ENST00000519485 PHACTR2O75167 634 aa6.33□□□□□ -1.4
CSMD3-209ENST00000519485 FLCNQ8NFG4 579 aa6.33□□□□□ -1.4
CSMD3-209ENST00000519485 PBXIP1Q96AQ6 731 aa6.33□□□□□ -1.4
CSMD3-209ENST00000519485 GSX1Q9H4S2 264 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-209ENST00000519485 ZFYVE1Q9HBF4 777 aa6.33□□□□□ -1.4
CSMD3-209ENST00000519485 ZC3H7BQ9UGR2 993 aaKnown RBP6.33□□□□□ -1.4
CSMD3-209ENST00000519485 SYNGAP1Q96PV0 1343 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 PAPLNO95428 1278 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 USP5P45974 858 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 GSTM4Q03013 218 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 SEZ6L2Q6UXD5 910 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 ACSS3Q9H6R3 686 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 ACTL7BQ9Y614 415 aa6.32□□□□□ -1.4
CSMD3-209ENST00000519485 CYP11A1P05108 521 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 MPSTP25325 297 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 WFDC3Q8IUB2 231 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 STK11IPQ8N1F8 1099 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 ASAP3Q8TDY4 903 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 SEMA6CQ9H3T2 930 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 POLIQ9UNA4 740 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 AMOTL2Q9Y2J4 779 aa6.31□□□□□ -1.4
CSMD3-209ENST00000519485 NFICP08651 508 aa6.3□□□□□ -1.4
CSMD3-209ENST00000519485 ZNF765Q7L2R6 523 aa6.3□□□□□ -1.4
CSMD3-209ENST00000519485 BCL7CQ8WUZ0 217 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-209ENST00000519485 CLEC4MQ9H2X3 399 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-209ENST00000519485 C1GALT1Q9NS00 363 aa6.3□□□□□ -1.4
CSMD3-209ENST00000519485 BIN1O00499 593 aa6.29□□□□□ -1.4
CSMD3-209ENST00000519485 OGFOD3Q6PK18 319 aa6.29□□□□□ -1.4
CSMD3-209ENST00000519485 MISP3Q96FF7 219 aa6.29□□□□□ -1.4
CSMD3-209ENST00000519485 LATS2Q9NRM7 1088 aa6.29□□□□□ -1.4
CSMD3-209ENST00000519485 FOXD3Q9UJU5 478 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-209ENST00000519485 SLC5A6Q9Y289 635 aa6.29□□□□□ -1.4
CSMD3-209ENST00000519485 MAOBP27338 520 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 PCDH1Q08174 1060 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 CCNJLQ8IV13 435 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 GJD3Q8N144 294 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 GTF3C2Q8WUA4 911 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-209ENST00000519485 ZFYVE28Q9HCC9 887 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 FAM105AQ9NUU6 356 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 GTF3C3Q9Y5Q9 886 aa6.28□□□□□ -1.4
CSMD3-209ENST00000519485 A0A096LPE4 126 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 A0A1W2PPZ6 126 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 FAM13AO94988 1023 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 CTSBP07858 339 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 POU4F3Q15319 338 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 ZNF423Q2M1K9 1284 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 LRRC4CQ9HCJ2 640 aa6.27□□□□□ -1.41
CSMD3-209ENST00000519485 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-209ENST00000519485 CARMIL2Q6F5E8 1435 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 METTL12A8MUP2 240 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 B3GALT4O96024 378 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 RAB6AP20340 208 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 ZNF792Q3KQV3 632 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 ATG4DQ86TL0 474 aaPredicted RBP6.26□□□□□ -1.41
CSMD3-209ENST00000519485 DDX54Q8TDD1 881 aaKnown RBP6.26□□□□□ -1.41
CSMD3-209ENST00000519485 TCF12Q99081 682 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 TRIM56Q9BRZ2 755 aaKnown RBP6.26□□□□□ -1.41
CSMD3-209ENST00000519485 KRTAP4-2Q9BYR5 136 aa6.26□□□□□ -1.41
CSMD3-209ENST00000519485 DBX1A6NMT0 343 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 FZD6O60353 706 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 SSFA2P28290 1259 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 CYP27C1Q4G0S4 372 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 LCE4AQ5TA78 99 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 DYMQ7RTS9 669 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 SPRED2Q7Z698 418 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 GALNT12Q8IXK2 581 aa6.25□□□□□ -1.41
CSMD3-209ENST00000519485 A0A1W2PP55 124 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 FUT4P22083 530 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 ASPAP45381 313 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 GRIA4P48058 902 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 SF3B2Q13435 895 aaKnown RBP6.24□□□□□ -1.41
CSMD3-209ENST00000519485 PLCL1Q15111 1095 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 GLIS3Q8NEA6 775 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 CORO1BQ9BR76 489 aa6.24□□□□□ -1.41
CSMD3-209ENST00000519485 FARP2O94887 1054 aaPredicted RBP6.23□□□□□ -1.41
CSMD3-209ENST00000519485 FBLN7Q53RD9 439 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 AKAP4Q5JQC9 854 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 KIAA0319Q5VV43 1072 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 TMEM40Q8WWA1 233 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 LIN7BQ9HAP6 207 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 MKNK2Q9HBH9 465 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 RAD18Q9NS91 495 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 AP4E1Q9UPM8 1137 aa6.23□□□□□ -1.41
CSMD3-209ENST00000519485 DYNC1LI2O43237 492 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-209ENST00000519485 AOC2O75106 756 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 ITPKAP23677 461 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 PTPN12Q05209 780 aaKnown RBP6.22□□□□□ -1.41
CSMD3-209ENST00000519485 MTMR3Q13615 1198 aa6.22□□□□□ -1.41
CSMD3-209ENST00000519485 ZNF648Q5T619 568 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-209ENST00000519485 SPOCD1Q6ZMY3 1216 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms