RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 DACT2Q5SW24 774 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 STRIP1Q5VSL9 837 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 TMED8Q6PL24 325 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 USP17L1Q7RTZ2 530 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 MICALL2Q8IY33 904 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 OGFOD1Q8N543 542 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 AGBL3Q8NEM8 1001 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 FAM84BQ96KN1 310 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 NEUROD6Q96NK8 337 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 MXD3Q9BW11 206 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 TAF1DQ9H5J8 278 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 DENND2AQ9ULE3 1009 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 JAG2Q9Y219 1238 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 SUGT1Q9Y2Z0 365 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 MYH13Q9UKX3 1938 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 ERC2O15083 957 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 SASH1O94885 1247 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 ADORA1P30542 326 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 BCAMP50895 628 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 GTF2IP78347 998 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 LRRFIP1Q32MZ4 808 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 EAPPQ56P03 285 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 SPTY2D1Q68D10 685 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 TTLL5Q6EMB2 1281 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 RSBN1LQ6PCB5 846 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 FBXO33Q7Z6M2 555 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 AACSQ86V21 672 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 SLF2Q8IX21 1173 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 WDR66Q8TBY9 1149 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 DCTPP1Q9H773 170 aa9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 CIZ1Q9ULV3 898 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 IQSEC3Q9UPP2 1182 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 COL1A1P02452 1464 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-222ENST00000515847 H7C1D1 291 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 TOMM70O94826 608 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 TIMM10P62072 90 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 PNMA8AQ86V59 439 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 TDRD7Q8NHU6 1098 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 RBM46Q8TBY0 533 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 TRPM4Q8TD43 1214 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 DPF2Q92785 391 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 XAGE2Q96GT9 111 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 ZNF512BQ96KM6 892 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 GMLQ99445 158 aa9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 ADARB2Q9NS39 739 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 CNOT7Q9UIV1 285 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-222ENST00000515847 APBB1O00213 710 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 EGFRP00533 1210 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 PHKA1P46020 1223 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 PSEN1P49768 467 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 CHAF1AQ13111 956 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 TTF1Q15361 905 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 CCDC102BQ68D86 513 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 CENPQQ7L2Z9 268 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 LDHDQ86WU2 507 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 CERS5Q8N5B7 392 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 SLAIN1Q8ND83 568 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 PCDHB15Q9Y5E8 787 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 FAM205AQ6ZU69 1335 aa9.45□□□□□ -0.9
LIMCH1-222ENST00000515847 MYO1BO43795 1136 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 USP17L8P0C7I0 530 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 ARID4AP29374 1257 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 ZNF280AP59817 542 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 C1QTNF8P60827 252 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 IRX6P78412 446 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 GSTO1P78417 241 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 TBC1D10BQ4KMP7 808 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 MFSD14BQ5SR56 506 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 USP50Q70EL3 339 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 SAMD7Q7Z3H4 446 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 CERS3Q8IU89 383 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 KIAA0825Q8IV33 1275 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 SMC1BQ8NDV3 1235 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 CCDC136Q96JN2 1154 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 IL1RAPL2Q9NP60 686 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 TTC41PQ6P2S7 1318 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 SALL1Q9NSC2 1324 aa9.44□□□□□ -0.9
LIMCH1-222ENST00000515847 AOX1Q06278 1338 aa9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 F8W031 263 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 HIRAP54198 1017 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 GRIK5Q16478 980 aa9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 KIF4BQ2VIQ3 1234 aa9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 RBM26Q5T8P6 1007 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 ANKRD45Q5TZF3 282 aa9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 DZIP1Q86YF9 867 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 SMC5Q8IY18 1101 aa9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 NOL10Q9BSC4 688 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 ECHDC1Q9NTX5 307 aa9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 TLR7Q9NYK1 1049 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-222ENST00000515847 GLRX3O76003 335 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 LDHBP07195 334 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 HDLBPQ00341 1268 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 FSTL1Q12841 308 aa9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 MKRN3Q13064 507 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 RASGRF1Q13972 1273 aa9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 MAP1SQ66K74 1059 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 ZSCAN25Q6NSZ9 544 aa9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 SPATA5Q8NB90 893 aa9.42□□□□□ -0.9
LIMCH1-222ENST00000515847 EAF2Q96CJ1 260 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms