RNA–Protein interactions for RNA: ENST00000515546.1

HMGCLL1-209, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 4

Gene HMGCLL1, Length 569 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-209ENST00000515546 MAST3O60307 1309 aa18.38■□□□□ 0.53
HMGCLL1-209ENST00000515546 PDS5AQ29RF7 1337 aaKnown RBP18.38■□□□□ 0.53
HMGCLL1-209ENST00000515546 NF2P35240 595 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 CTCFP49711 727 aaPredicted RBP18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 RBM5P52756 815 aaKnown RBP eCLIP18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 ATP8B2P98198 1209 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 COL13A1Q5TAT6 717 aaPredicted RBP18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 CCDC102BQ68D86 513 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 MOB2Q70IA6 237 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 C1orf115Q9H7X2 142 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 GNL3LQ9NVN8 582 aaKnown RBP18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 RCAN3Q9UKA8 241 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 AKAP2Q9Y2D5 859 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 SALL1Q9NSC2 1324 aa18.37■□□□□ 0.53
HMGCLL1-209ENST00000515546 A0A1B0GUL7 405 aa18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 MS4A1P11836 297 aa18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 ZNF157P51786 506 aaPredicted RBP18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 RASAL3Q86YV0 1011 aa18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 TEKT1Q969V4 418 aa18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 ZDHHC15Q96MV8 337 aa18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 ZNF70Q9UC06 446 aaPredicted RBP18.36■□□□□ 0.53
HMGCLL1-209ENST00000515546 HSPA8P11142 646 aaKnown RBP18.35■□□□□ 0.53
HMGCLL1-209ENST00000515546 TIMM10P62072 90 aa18.35■□□□□ 0.53
HMGCLL1-209ENST00000515546 ZIC5Q96T25 663 aa18.35■□□□□ 0.53
HMGCLL1-209ENST00000515546 TDRD3Q9H7E2 651 aaKnown RBP18.35■□□□□ 0.53
HMGCLL1-209ENST00000515546 VEZTQ9HBM0 779 aa18.35■□□□□ 0.53
HMGCLL1-209ENST00000515546 DENND2AQ9ULE3 1009 aa18.35■□□□□ 0.53
HMGCLL1-209ENST00000515546 TNFAIP1Q13829 316 aa18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 RASGRF1Q13972 1273 aa18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 RASA3Q14644 834 aa18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 MVPQ14764 893 aaKnown RBP18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 HHIPL2Q6UWX4 724 aa18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 XAGE2Q96GT9 111 aa18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 PRDM10Q9NQV6 1147 aa18.34■□□□□ 0.53
HMGCLL1-209ENST00000515546 UBE2Q2LH0YL09 131 aa18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 CA12O43570 354 aa18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 G3BP1Q13283 466 aaKnown RBP eCLIP18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 MAP3K11Q16584 847 aa18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 LDLRAD1Q5T700 205 aa18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 APOBEC3HQ6NTF7 200 aaKnown RBP18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 CEP85Q6P2H3 762 aa18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 GPR108Q9NPR9 543 aa18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 NOP58Q9Y2X3 529 aaKnown RBP18.33■□□□□ 0.52
HMGCLL1-209ENST00000515546 PRDX5P30044 214 aa18.32■□□□□ 0.52
HMGCLL1-209ENST00000515546 ARMC9Q7Z3E5 817 aa18.32■□□□□ 0.52
HMGCLL1-209ENST00000515546 TEPSINQ96N21 525 aa18.32■□□□□ 0.52
HMGCLL1-209ENST00000515546 KIF23Q02241 960 aaPredicted RBP18.31■□□□□ 0.52
HMGCLL1-209ENST00000515546 TTLL12Q14166 644 aaPredicted RBP18.31■□□□□ 0.52
HMGCLL1-209ENST00000515546 SUPT20HL1Q3ZLR7 823 aa18.31■□□□□ 0.52
HMGCLL1-209ENST00000515546 NBPF12Q5TAG4 269 aaPredicted RBP18.31■□□□□ 0.52
HMGCLL1-209ENST00000515546 FKBP1CQ5VVH2 108 aa18.31■□□□□ 0.52
HMGCLL1-209ENST00000515546 BEGAINQ9BUH8 593 aa18.31■□□□□ 0.52
HMGCLL1-209ENST00000515546 LDHBP07195 334 aaKnown RBP18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 ARID4AP29374 1257 aaPredicted RBP18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 LBX1P52954 281 aa18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 YTHDC1Q96MU7 727 aaKnown RBP18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 DDX19BQ9UMR2 479 aa18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 ANGEL1Q9UNK9 670 aaKnown RBP18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 DAGLAQ9Y4D2 1042 aa18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 RPAP1Q9BWH6 1393 aaPredicted RBP18.3■□□□□ 0.52
HMGCLL1-209ENST00000515546 UNCXA6NJT0 531 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 SURF6O75683 361 aaKnown RBP18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 PRKG1Q13976 671 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 DIXDC1Q155Q3 683 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 TNNI3KQ59H18 835 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 CDAN1Q8IWY9 1227 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 ZGPATQ8N5A5 531 aaKnown RBP18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 NEUROD6Q96NK8 337 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 FZD1Q9UP38 647 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 FPGT-TNNI3KV9GXZ4 949 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 LAMB1P07942 1786 aa18.29■□□□□ 0.52
HMGCLL1-209ENST00000515546 GAKO14976 1311 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 OTOFQ9HC10 1997 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 TCP10L2B9ZVM9 353 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 PPP1R12BO60237 982 aaPredicted RBP18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 TNNI2P48788 182 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 CACNB3P54284 484 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 IFFO2Q5TF58 517 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 FAM83AQ86UY5 434 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 REM2Q8IYK8 340 aaPredicted RBP18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 TMEM39BQ9GZU3 492 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 ZBTB40Q9NUA8 1239 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 SAGE1Q9NXZ1 904 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 HMG20BQ9P0W2 317 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 COG6Q9Y2V7 657 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 RFX7Q2KHR2 1363 aa18.28■□□□□ 0.52
HMGCLL1-209ENST00000515546 OS9Q13438 667 aaPredicted RBP18.27■□□□□ 0.52
HMGCLL1-209ENST00000515546 PDE3AQ14432 1141 aa18.27■□□□□ 0.52
HMGCLL1-209ENST00000515546 SPATA5Q8NB90 893 aa18.27■□□□□ 0.52
HMGCLL1-209ENST00000515546 CSRNP1Q96S65 589 aa18.27■□□□□ 0.52
HMGCLL1-209ENST00000515546 TMOD2Q9NZR1 351 aa18.27■□□□□ 0.52
HMGCLL1-209ENST00000515546 GORABQ5T7V8 394 aa18.26■□□□□ 0.51
HMGCLL1-209ENST00000515546 TNS4Q8IZW8 715 aa18.26■□□□□ 0.51
HMGCLL1-209ENST00000515546 USP2O75604 605 aaPredicted RBP18.25■□□□□ 0.51
HMGCLL1-209ENST00000515546 UQCRFS1P1P0C7P4 283 aa18.25■□□□□ 0.51
HMGCLL1-209ENST00000515546 MCAMP43121 646 aa18.25■□□□□ 0.51
HMGCLL1-209ENST00000515546 IREB2P48200 963 aaKnown RBP18.25■□□□□ 0.51
HMGCLL1-209ENST00000515546 C20orf194Q5TEA3 1177 aa18.25■□□□□ 0.51
HMGCLL1-209ENST00000515546 SPRYD7Q5W111 196 aa18.25■□□□□ 0.51
HMGCLL1-209ENST00000515546 SPTY2D1Q68D10 685 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms