RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 SPDYE2Q495Y8 402 aa17■□□□□ 0.31
TCOF1-215ENST00000515516 ATG9AQ7Z3C6 839 aa17■□□□□ 0.31
TCOF1-215ENST00000515516 TEKT1Q969V4 418 aa17■□□□□ 0.31
TCOF1-215ENST00000515516 TDRD3Q9H7E2 651 aaKnown RBP17■□□□□ 0.31
TCOF1-215ENST00000515516 SUGT1Q9Y2Z0 365 aa17■□□□□ 0.31
TCOF1-215ENST00000515516 MAST3O60307 1309 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 BCAR3O75815 825 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 IREB2P48200 963 aaKnown RBP16.99■□□□□ 0.31
TCOF1-215ENST00000515516 SREBF2Q12772 1141 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 LDLRAD1Q5T700 205 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 ATF7IPQ6VMQ6 1270 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 WDR66Q8TBY9 1149 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 TMOD2Q9NZR1 351 aa16.99■□□□□ 0.31
TCOF1-215ENST00000515516 UNCXA6NJT0 531 aa16.98■□□□□ 0.31
TCOF1-215ENST00000515516 TCP10L2B9ZVM9 353 aa16.98■□□□□ 0.31
TCOF1-215ENST00000515516 NBPF12Q5TAG4 269 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-215ENST00000515516 MRIQ9BWK5 157 aa16.98■□□□□ 0.31
TCOF1-215ENST00000515516 COPRSQ9NQ92 184 aa16.98■□□□□ 0.31
TCOF1-215ENST00000515516 SRGAP3O43295 1099 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 TRIM27P14373 513 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 TM4SF4P48230 202 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 DGKZQ13574 1117 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 GRIK5Q16478 980 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 MAP3K11Q16584 847 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 ZKSCAN2Q63HK3 967 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 FZD1Q9UP38 647 aa16.97■□□□□ 0.31
TCOF1-215ENST00000515516 PA2G4Q9UQ80 394 aaKnown RBP16.97■□□□□ 0.31
TCOF1-215ENST00000515516 ZNF646O15015 1829 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-215ENST00000515516 AOX1Q06278 1338 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 CCDC85CA6NKD9 419 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 GNAI2P04899 355 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 SPRYD7Q5W111 196 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 CLUAP1Q96AJ1 413 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 ZDHHC15Q96MV8 337 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 MCOLN1Q9GZU1 580 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 A0A1B0GUL6 1792 aa16.96■□□□□ 0.31
TCOF1-215ENST00000515516 MANSC4A6NHS7 340 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-215ENST00000515516 INHBEP58166 350 aa16.95■□□□□ 0.3
TCOF1-215ENST00000515516 ANKRD13AQ8IZ07 590 aa16.95■□□□□ 0.3
TCOF1-215ENST00000515516 DENND2AQ9ULE3 1009 aa16.95■□□□□ 0.3
TCOF1-215ENST00000515516 AKAP2Q9Y2D5 859 aa16.95■□□□□ 0.3
TCOF1-215ENST00000515516 SEMA3EO15041 775 aa16.94■□□□□ 0.3
TCOF1-215ENST00000515516 USP2O75604 605 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-215ENST00000515516 ZBTB48P10074 688 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-215ENST00000515516 HHIPL2Q6UWX4 724 aa16.94■□□□□ 0.3
TCOF1-215ENST00000515516 HOOK2Q96ED9 719 aa16.94■□□□□ 0.3
TCOF1-215ENST00000515516 TBC1D8O95759 1140 aa16.93■□□□□ 0.3
TCOF1-215ENST00000515516 ALDH1A1P00352 501 aa16.93■□□□□ 0.3
TCOF1-215ENST00000515516 LDHBP07195 334 aaKnown RBP16.93■□□□□ 0.3
TCOF1-215ENST00000515516 MTX1Q13505 466 aa16.93■□□□□ 0.3
TCOF1-215ENST00000515516 FTSJ3Q8IY81 847 aaKnown RBP16.93■□□□□ 0.3
TCOF1-215ENST00000515516 WNK4Q96J92 1243 aa16.93■□□□□ 0.3
TCOF1-215ENST00000515516 CLMNQ96JQ2 1002 aa16.93■□□□□ 0.3
TCOF1-215ENST00000515516 TMEM39BQ9GZU3 492 aa16.93■□□□□ 0.3
TCOF1-215ENST00000515516 CACNB3P54284 484 aa16.92■□□□□ 0.3
TCOF1-215ENST00000515516 G3BP1Q13283 466 aaKnown RBP eCLIP16.92■□□□□ 0.32e-7■■■■□ 22.1
TCOF1-215ENST00000515516 OTUD7BQ6GQQ9 843 aa16.92■□□□□ 0.3
TCOF1-215ENST00000515516 APOBEC3HQ6NTF7 200 aaKnown RBP16.92■□□□□ 0.3
TCOF1-215ENST00000515516 ZGPATQ8N5A5 531 aaKnown RBP16.92■□□□□ 0.3
TCOF1-215ENST00000515516 SSC5DA1L4H1 1573 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 PHKA1P46020 1223 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 TIMM10P62072 90 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 TFCP2Q12800 502 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 MVPQ14764 893 aaKnown RBP16.91■□□□□ 0.3
TCOF1-215ENST00000515516 FKBP1CQ5VVH2 108 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 CCDC102BQ68D86 513 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 FAM83AQ86UY5 434 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 TMEM57Q8N5G2 664 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 TEPSINQ96N21 525 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 NEUROD6Q96NK8 337 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 TNNQ9UQP3 1299 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 CSADQ9Y600 493 aa16.91■□□□□ 0.3
TCOF1-215ENST00000515516 ADORA1P30542 326 aa16.9■□□□□ 0.3
TCOF1-215ENST00000515516 MAP3K9P80192 1104 aa16.9■□□□□ 0.3
TCOF1-215ENST00000515516 GORABQ5T7V8 394 aa16.9■□□□□ 0.3
TCOF1-215ENST00000515516 CTU1Q7Z7A3 348 aaKnown RBP16.9■□□□□ 0.3
TCOF1-215ENST00000515516 ELP3Q9H9T3 547 aa16.9■□□□□ 0.3
TCOF1-215ENST00000515516 A0A1B0GUL7 405 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 GPR25O00155 361 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 PRDX5P30044 214 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 SPTY2D1Q68D10 685 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-215ENST00000515516 IFNL1Q8IU54 200 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 SLF2Q8IX21 1173 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 ZNF296Q8WUU4 475 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-215ENST00000515516 OPTNQ96CV9 577 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 XAGE2Q96GT9 111 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 ZBED9Q6R2W3 1325 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 SALL1Q9NSC2 1324 aa16.89■□□□□ 0.29
TCOF1-215ENST00000515516 DIXDC1Q155Q3 683 aa16.88■□□□□ 0.29
TCOF1-215ENST00000515516 NOM1Q5C9Z4 860 aaKnown RBP16.88■□□□□ 0.29
TCOF1-215ENST00000515516 DCAF15Q66K64 600 aa16.88■□□□□ 0.29
TCOF1-215ENST00000515516 ITPRIPQ8IWB1 547 aa16.88■□□□□ 0.29
TCOF1-215ENST00000515516 CDAN1Q8IWY9 1227 aa16.88■□□□□ 0.29
TCOF1-215ENST00000515516 ABCF2Q9UG63 623 aa16.88■□□□□ 0.29
TCOF1-215ENST00000515516 DAGLAQ9Y4D2 1042 aa16.88■□□□□ 0.29
TCOF1-215ENST00000515516 ZBTB22O15209 634 aa16.87■□□□□ 0.29
TCOF1-215ENST00000515516 FKTNO75072 461 aa16.87■□□□□ 0.29
TCOF1-215ENST00000515516 OS9Q13438 667 aaPredicted RBP16.87■□□□□ 0.29
TCOF1-215ENST00000515516 PKN2Q16513 984 aaKnown RBP16.87■□□□□ 0.29
TCOF1-215ENST00000515516 DZIP1Q86YF9 867 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms