RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 POP1Q99575 1024 aaKnown RBP8.27□□□□□ -1.09
NUP54-218ENST00000515460 MTMR7Q9Y216 660 aa8.27□□□□□ -1.09
NUP54-218ENST00000515460 EFCAB5A4FU69 1503 aa8.27□□□□□ -1.09
NUP54-218ENST00000515460 GOLGA3Q08378 1498 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 PLA2R1Q13018 1463 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 TMEM88BA6NKF7 163 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 PTPRAP18433 802 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 EPHA1P21709 976 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 SSTR4P31391 388 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 DUOXA2Q1HG44 320 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 C8orf34Q49A92 452 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 Q6ZS46 218 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 HELQQ8TDG4 1101 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 PCMTD2Q9NV79 361 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 STOML1Q9UBI4 398 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 RAXQ9Y2V3 346 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 ABCA8O94911 1581 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 VWDEQ8N2E2 1590 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 ATP10BO94823 1461 aa8.26□□□□□ -1.09
NUP54-218ENST00000515460 A6NHS1 94 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 TRPA1O75762 1119 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 ACPPP15309 386 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 CES1P23141 567 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 C1orf127Q8N9H9 656 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 TTC16Q8NEE8 873 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 SUPT6HQ7KZ85 1726 aaKnown RBP8.25□□□□□ -1.09
NUP54-218ENST00000515460 ABCA9Q8IUA7 1624 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 RNF17Q9BXT8 1623 aaKnown RBP8.25□□□□□ -1.09
NUP54-218ENST00000515460 UTRNP46939 3433 aa8.25□□□□□ -1.09
NUP54-218ENST00000515460 PCSK2P16519 638 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 SSFA2P28290 1259 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 KLHL23Q8NBE8 558 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 KLHDC7BQ96G42 594 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 GGNBP2Q9H3C7 697 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 HECW1Q76N89 1606 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 ATP10AO60312 1499 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 ZMYM4Q5VZL5 1548 aa8.24□□□□□ -1.09
NUP54-218ENST00000515460 STRCP1A6NGW2 1772 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 DHX15O43143 795 aaKnown RBP8.23□□□□□ -1.09
NUP54-218ENST00000515460 RPLP1P05386 114 aaKnown RBP8.23□□□□□ -1.09
NUP54-218ENST00000515460 NOM1Q5C9Z4 860 aaKnown RBP8.23□□□□□ -1.09
NUP54-218ENST00000515460 B4GALNT3Q6L9W6 998 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 KIAA1211Q6ZU35 1233 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 FAM9AQ8IZU1 332 aaPredicted RBP8.23□□□□□ -1.09
NUP54-218ENST00000515460 UBASH3BQ8TF42 649 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 CEP41Q9BYV8 373 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 SEC31BQ9NQW1 1179 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 USTQ9Y2C2 406 aa8.23□□□□□ -1.09
NUP54-218ENST00000515460 TM4SF5O14894 197 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 ADAM11O75078 769 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 PDGFAP04085 211 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 MPSTP25325 297 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 CABP4P57796 275 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 MTMR3Q13615 1198 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 AAMPQ13685 434 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 SLC51AQ86UW1 340 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 ARMC10Q8N2F6 343 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 GTF3C2Q8WUA4 911 aaPredicted RBP8.22□□□□□ -1.09
NUP54-218ENST00000515460 FOXD4L4Q8WXT5 416 aaPredicted RBP8.22□□□□□ -1.09
NUP54-218ENST00000515460 SLC7A3Q8WY07 619 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 UTP4Q969X6 686 aaKnown RBP8.22□□□□□ -1.09
NUP54-218ENST00000515460 HHIPQ96QV1 700 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 KRTAP9-2Q9BYQ4 174 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 ADAM19Q9H013 955 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 SALL4Q9UJQ4 1053 aa8.22□□□□□ -1.09
NUP54-218ENST00000515460 FAM135BQ49AJ0 1406 aa8.21□□□□□ -1.09
NUP54-218ENST00000515460 C9orf84Q5VXU9 1444 aa8.21□□□□□ -1.09
NUP54-218ENST00000515460 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.21□□□□□ -1.1
NUP54-218ENST00000515460 DEFB132Q7Z7B7 95 aa8.21□□□□□ -1.1
NUP54-218ENST00000515460 JCADQ9P266 1359 aa8.21□□□□□ -1.1
NUP54-218ENST00000515460 NEURL4Q96JN8 1562 aa8.2□□□□□ -1.1
NUP54-218ENST00000515460 PDE2AO00408 941 aaPredicted RBP8.2□□□□□ -1.1
NUP54-218ENST00000515460 IGLV1-40P01703 118 aa8.2□□□□□ -1.1
NUP54-218ENST00000515460 CENPBP07199 599 aaPredicted RBP8.2□□□□□ -1.1
NUP54-218ENST00000515460 RANGAP1P46060 587 aaPredicted RBP8.2□□□□□ -1.1
NUP54-218ENST00000515460 EIF1AXP47813 144 aaKnown RBP8.2□□□□□ -1.1
NUP54-218ENST00000515460 NLRP12P59046 1061 aa8.2□□□□□ -1.1
NUP54-218ENST00000515460 ALKBH2Q6NS38 261 aa8.2□□□□□ -1.1
NUP54-218ENST00000515460 XKR5Q6UX68 686 aa8.2□□□□□ -1.1
NUP54-218ENST00000515460 DZANK1Q9NVP4 752 aa8.2□□□□□ -1.1
NUP54-218ENST00000515460 NHSL1Q5SYE7 1610 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 H3BRJ5 948 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 NFKBIEO00221 500 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 GSC2O15499 205 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 SART1O43290 800 aaKnown RBP8.19□□□□□ -1.1
NUP54-218ENST00000515460 MZF1P28698 734 aaPredicted RBP8.19□□□□□ -1.1
NUP54-218ENST00000515460 TRIM42Q8IWZ5 723 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 POLIQ9UNA4 740 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 AFF2P51816 1311 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 MAGI2Q86UL8 1455 aa8.19□□□□□ -1.1
NUP54-218ENST00000515460 HMX2A2RU54 273 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 MED26O95402 600 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 TGFB1P01137 390 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 PRELPP51888 382 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 FAM46AQ96IP4 442 aaKnown RBP8.18□□□□□ -1.1
NUP54-218ENST00000515460 ARID3AQ99856 593 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 C7orf69Q9H7B7 122 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 CEP170BQ9Y4F5 1589 aaPredicted RBP8.18□□□□□ -1.1
NUP54-218ENST00000515460 ROBO1Q9Y6N7 1651 aa8.18□□□□□ -1.1
NUP54-218ENST00000515460 KRTAP9-6A0A140TA67 174 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms