RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 COL1A1P02452 1464 aaPredicted RBP17.44■□□□□ 0.38
NUP54-216ENST00000514901 ADAMTSL1Q8N6G6 1762 aa17.43■□□□□ 0.38
NUP54-216ENST00000514901 SMARCA5O60264 1052 aaPredicted RBP17.43■□□□□ 0.38
NUP54-216ENST00000514901 HHIPL2Q6UWX4 724 aa17.43■□□□□ 0.38
NUP54-216ENST00000514901 ERICH6Q7L0X2 663 aa17.43■□□□□ 0.38
NUP54-216ENST00000514901 SLF2Q8IX21 1173 aa17.43■□□□□ 0.38
NUP54-216ENST00000514901 ABCF2Q9UG63 623 aa17.43■□□□□ 0.38
NUP54-216ENST00000514901 SPDYE2BA6NHP3 402 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 ITGBL1O95965 494 aaPredicted RBP17.42■□□□□ 0.38
NUP54-216ENST00000514901 SPDYE6P0CI01 402 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 CRKP46108 304 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 GRIK5Q16478 980 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 NBPF9Q3BBW0 867 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 GPATCH3Q96I76 525 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 BCL11AQ9H165 835 aa17.42■□□□□ 0.38
NUP54-216ENST00000514901 PRDX5P30044 214 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 ANKRD45Q5TZF3 282 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 ANGEL2Q5VTE6 544 aaKnown RBP17.41■□□□□ 0.38
NUP54-216ENST00000514901 SULF1Q8IWU6 871 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 SMC5Q8IY18 1101 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 PRMT6Q96LA8 375 aaPredicted RBP17.41■□□□□ 0.38
NUP54-216ENST00000514901 ZDHHC15Q96MV8 337 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 GGA3Q9NZ52 723 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 LRP2BPQ9P2M1 347 aa17.41■□□□□ 0.38
NUP54-216ENST00000514901 IGHDP01880 384 aa17.4■□□□□ 0.38
NUP54-216ENST00000514901 ATP5JP18859 108 aa17.4■□□□□ 0.38
NUP54-216ENST00000514901 GSTO1P78417 241 aa17.4■□□□□ 0.38
NUP54-216ENST00000514901 PI16Q6UXB8 463 aa17.4■□□□□ 0.38
NUP54-216ENST00000514901 KRT26Q7Z3Y9 468 aa17.4■□□□□ 0.38
NUP54-216ENST00000514901 DZIP1Q86YF9 867 aaKnown RBP17.4■□□□□ 0.38
NUP54-216ENST00000514901 APOBEC3FQ8IUX4 373 aaKnown RBP17.4■□□□□ 0.38
NUP54-216ENST00000514901 FAM163AQ96GL9 167 aaPredicted RBP17.4■□□□□ 0.38
NUP54-216ENST00000514901 SNRKQ9NRH2 765 aa17.4■□□□□ 0.38
NUP54-216ENST00000514901 POLR2AP24928 1970 aaKnown RBP17.4■□□□□ 0.38
NUP54-216ENST00000514901 CYP2E1P05181 493 aaPredicted RBP17.39■□□□□ 0.37
NUP54-216ENST00000514901 LDHCP07864 332 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 ZAP70P43403 619 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 TTF1Q15361 905 aaPredicted RBP17.39■□□□□ 0.37
NUP54-216ENST00000514901 TMED8Q6PL24 325 aaPredicted RBP17.39■□□□□ 0.37
NUP54-216ENST00000514901 TBC1D9Q6ZT07 1266 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 USP48Q86UV5 1035 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 ECHDC1Q9NTX5 307 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 PASKQ96RG2 1323 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 AKAP11Q9UKA4 1901 aa17.39■□□□□ 0.37
NUP54-216ENST00000514901 NEFLP07196 543 aa17.38■□□□□ 0.37
NUP54-216ENST00000514901 HSPA6P17066 643 aa17.38■□□□□ 0.37
NUP54-216ENST00000514901 APLP1P51693 650 aa17.38■□□□□ 0.37
NUP54-216ENST00000514901 GLIS2Q9BZE0 524 aaPredicted RBP17.38■□□□□ 0.37
NUP54-216ENST00000514901 RAI14Q9P0K7 980 aa17.38■□□□□ 0.37
NUP54-216ENST00000514901 MECOMQ03112 1051 aa17.37■□□□□ 0.37
NUP54-216ENST00000514901 SPDYE2Q495Y8 402 aa17.37■□□□□ 0.37
NUP54-216ENST00000514901 APOBEC3HQ6NTF7 200 aaKnown RBP17.37■□□□□ 0.37
NUP54-216ENST00000514901 HAUS7Q99871 368 aa17.37■□□□□ 0.37
NUP54-216ENST00000514901 PCDHAC2Q9Y5I4 1007 aa17.37■□□□□ 0.37
NUP54-216ENST00000514901 ASTN2O75129 1339 aaPredicted RBP17.37■□□□□ 0.37
NUP54-216ENST00000514901 TTC41PQ6P2S7 1318 aa17.37■□□□□ 0.37
NUP54-216ENST00000514901 MAP3K12Q12852 859 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 TNFAIP1Q13829 316 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 DIXDC1Q155Q3 683 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 NSUN4Q96CB9 384 aaKnown RBP17.36■□□□□ 0.37
NUP54-216ENST00000514901 BOLA2Q9H3K6 86 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 TMOD2Q9NZR1 351 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 ZNF70Q9UC06 446 aaPredicted RBP17.36■□□□□ 0.37
NUP54-216ENST00000514901 DAGLAQ9Y4D2 1042 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 PPP2R3BQ9Y5P8 575 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 GAKO14976 1311 aa17.36■□□□□ 0.37
NUP54-216ENST00000514901 ERC2O15083 957 aa17.35■□□□□ 0.37
NUP54-216ENST00000514901 MAP4K4O95819 1239 aaPredicted RBP17.35■□□□□ 0.37
NUP54-216ENST00000514901 NUCB1Q02818 461 aa17.35■□□□□ 0.37
NUP54-216ENST00000514901 FKBP1CQ5VVH2 108 aa17.35■□□□□ 0.37
NUP54-216ENST00000514901 NAA16Q6N069 864 aaPredicted RBP17.35■□□□□ 0.37
NUP54-216ENST00000514901 TDRD3Q9H7E2 651 aaKnown RBP17.35■□□□□ 0.37
NUP54-216ENST00000514901 PIH1D3Q9NQM4 214 aaKnown RBP17.35■□□□□ 0.37
NUP54-216ENST00000514901 CLRN2A0PK11 232 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 TMEM88BA6NKF7 163 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 TRAF5O00463 557 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 TNNI2P48788 182 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 B4GALNT3Q6L9W6 998 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 CHD1LQ86WJ1 897 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 DNAJC2Q99543 621 aaKnown RBP17.34■□□□□ 0.37
NUP54-216ENST00000514901 VEZTQ9HBM0 779 aa17.34■□□□□ 0.37
NUP54-216ENST00000514901 MYH2Q9UKX2 1941 aa17.33■□□□□ 0.37
NUP54-216ENST00000514901 MROH7-TTC4A0A0A0MT08 1334 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 GPR75-ASB3A0A0A6YYF3 556 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 ADM5C9JUS6 153 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 GOLIM4O00461 696 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 IDH1O75874 414 aaKnown RBP17.33■□□□□ 0.36
NUP54-216ENST00000514901 GLRX3O76003 335 aaKnown RBP17.33■□□□□ 0.36
NUP54-216ENST00000514901 MX1P20591 662 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 NOL10Q9BSC4 688 aaKnown RBP17.33■□□□□ 0.36
NUP54-216ENST00000514901 DEFB129Q9H1M3 183 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 ANTXR1Q9H6X2 564 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 CREBZFQ9NS37 354 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 PAG1Q9NWQ8 432 aa17.33■□□□□ 0.36
NUP54-216ENST00000514901 CELF2O95319 508 aaKnown RBP17.32■□□□□ 0.36
NUP54-216ENST00000514901 BAG3O95817 575 aa17.32■□□□□ 0.36
NUP54-216ENST00000514901 CDC42EP5Q6NZY7 148 aa17.32■□□□□ 0.36
NUP54-216ENST00000514901 FAM83AQ86UY5 434 aa17.32■□□□□ 0.36
NUP54-216ENST00000514901 ZNF384Q8TF68 577 aa17.32■□□□□ 0.36
NUP54-216ENST00000514901 CDCA5Q96FF9 252 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms