RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 AMIGO3Q86WK7 504 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 MYD88Q99836 296 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 PIM2Q9P1W9 311 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 TRMT112Q9UI30 125 aaKnown RBP8.76□□□□□ -1.01
CLIP1-205ENST00000514271 ELL2O00472 640 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-205ENST00000514271 BBOX1O75936 387 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 AIMP1Q12904 312 aaKnown RBP8.76□□□□□ -1.01
CLIP1-205ENST00000514271 ZSCAN25Q6NSZ9 544 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 SUPT20HQ8NEM7 779 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 OSBPL5Q9H0X9 879 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-205ENST00000514271 PHAXQ9H814 394 aaKnown RBP8.76□□□□□ -1.01
CLIP1-205ENST00000514271 UBN2Q6ZU65 1347 aa8.76□□□□□ -1.01
CLIP1-205ENST00000514271 MCCP23508 829 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 DHX40Q8IX18 779 aaKnown RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 BPIFA3Q9BQP9 254 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 DUOX1Q9NRD9 1551 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 DICER1Q9UPY3 1922 aaKnown RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 GRM8O00222 908 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 CYP2C19P33261 490 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 AK2P54819 239 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 TMCO4Q5TGY1 634 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 SUSD4Q5VX71 490 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 TTC6Q86TZ1 520 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 IQUBQ8NA54 791 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 CDC5LQ99459 802 aaKnown RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 FER1L6Q2WGJ9 1857 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 OS9Q13438 667 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 TOB2Q14106 344 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 GPATCH11Q8N954 259 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 RPGRQ92834 1020 aaKnown RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 MRFAP1L1Q96HT8 127 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 PGBD1Q96JS3 809 aa8.75□□□□□ -1.01
CLIP1-205ENST00000514271 ZNF830Q96NB3 372 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-205ENST00000514271 MAFGO15525 162 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 U2AF2P26368 475 aaKnown RBP eCLIP8.74□□□□□ -1.011e-8■■■■□ 25.7
CLIP1-205ENST00000514271 ZNF75DP51815 510 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 C2CD5Q86YS7 1000 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 TMEM139Q8IV31 216 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 SMARCC2Q8TAQ2 1214 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 TTC41PQ6P2S7 1318 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 STX6O43752 255 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 HCLS1P14317 486 aaPredicted RBP8.74□□□□□ -1.01
CLIP1-205ENST00000514271 MMP14P50281 582 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 EVCP57679 992 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 DALRD3Q5D0E6 543 aaKnown RBP8.74□□□□□ -1.01
CLIP1-205ENST00000514271 TTLL6Q8N841 843 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 SYT17Q9BSW7 474 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 FAM237AA0A1B0GTK4 181 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 MUM1L1Q5H9M0 696 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 DDX46Q7L014 1031 aaKnown RBP8.74□□□□□ -1.01
CLIP1-205ENST00000514271 RTKN2Q8IZC4 609 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 MAP4K1Q92918 833 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 KAZALD1Q96I82 304 aa8.74□□□□□ -1.01
CLIP1-205ENST00000514271 DNAJC2Q99543 621 aaKnown RBP8.74□□□□□ -1.01
CLIP1-205ENST00000514271 MYH1P12882 1939 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 IRS4O14654 1257 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 IGKV5-2P06315 115 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 SRGNP10124 158 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 IRX5P78411 483 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 RESTQ13127 1097 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 MSL1Q68DK7 614 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 FAM200AQ8TCP9 573 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 CLSTN2Q9H4D0 955 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 C9orf78Q9NZ63 289 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 CSF1RP07333 972 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 FHDC1Q9C0D6 1143 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 LAMB1P07942 1786 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 NEK4P51957 841 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 CASP7P55210 303 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 CTSWP56202 376 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 GRAPQ13588 217 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 ADCK5Q3MIX3 580 aa8.73□□□□□ -1.01
CLIP1-205ENST00000514271 RABL6Q3YEC7 729 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 GRAPLQ8TC17 118 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 CACTINQ8WUQ7 758 aaKnown RBP8.73□□□□□ -1.01
CLIP1-205ENST00000514271 ANXA1P04083 346 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 ME3Q16798 604 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 TRIM65Q6PJ69 517 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 PAXBP1Q9Y5B6 917 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 ABCC12Q96J65 1359 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 USP27XA6NNY8 438 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 RAB11FIP3O75154 756 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 ERFEQ4G0M1 354 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 SP8Q8IXZ3 490 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 ANKRD2Q9GZV1 360 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 CBX8Q9HC52 389 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 NID2Q14112 1375 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 LTBP1Q14766 1721 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 ZNF609O15014 1411 aa8.72□□□□□ -1.01
CLIP1-205ENST00000514271 PLA2G4AP47712 749 aa8.71□□□□□ -1.01
CLIP1-205ENST00000514271 BICDL1Q6ZP65 573 aa8.71□□□□□ -1.01
CLIP1-205ENST00000514271 LRRC8AQ8IWT6 810 aa8.71□□□□□ -1.01
CLIP1-205ENST00000514271 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-205ENST00000514271 ZHX1Q9UKY1 873 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-205ENST00000514271 LIMCH1Q9UPQ0 1083 aa8.71□□□□□ -1.01
CLIP1-205ENST00000514271 RPS6KA5O75582 802 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 LIG1P18858 919 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 LRRCC1Q9C099 1032 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 TPCN1Q9ULQ1 816 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms