RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SH3TC2Q8TF17 1288 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 OTUD5Q96G74 571 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 ARHGAP39Q9C0H5 1083 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 FAM205AQ6ZU69 1335 aa25.87■■□□□ 1.73
SQSTM1-215ENST00000514093 ECM2O94769 699 aaPredicted RBP25.86■■□□□ 1.73
SQSTM1-215ENST00000514093 GYG1P46976 350 aa25.86■■□□□ 1.73
SQSTM1-215ENST00000514093 LDHAL6AQ6ZMR3 332 aa25.86■■□□□ 1.73
SQSTM1-215ENST00000514093 DZIP1LQ8IYY4 767 aaKnown RBP25.86■■□□□ 1.73
SQSTM1-215ENST00000514093 CNNM1Q9NRU3 951 aa25.86■■□□□ 1.73
SQSTM1-215ENST00000514093 SERPINA10Q9UK55 444 aa25.86■■□□□ 1.73
SQSTM1-215ENST00000514093 F6X3S4 739 aa25.85■■□□□ 1.73
SQSTM1-215ENST00000514093 H0YGN5 161 aa25.85■■□□□ 1.73
SQSTM1-215ENST00000514093 TAF7LQ5H9L4 462 aa25.85■■□□□ 1.73
SQSTM1-215ENST00000514093 TDRD7Q8NHU6 1098 aaKnown RBP25.85■■□□□ 1.73
SQSTM1-215ENST00000514093 CCDC57Q2TAC2 916 aa25.84■■□□□ 1.73
SQSTM1-215ENST00000514093 WWC1Q8IX03 1113 aa25.84■■□□□ 1.73
SQSTM1-215ENST00000514093 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.84■■□□□ 1.73
SQSTM1-215ENST00000514093 CSADQ9Y600 493 aa25.84■■□□□ 1.73
SQSTM1-215ENST00000514093 CRKP46108 304 aa25.83■■□□□ 1.73
SQSTM1-215ENST00000514093 HIBADHP31937 336 aaKnown RBP25.82■■□□□ 1.72
SQSTM1-215ENST00000514093 GRIK5Q16478 980 aa25.82■■□□□ 1.72
SQSTM1-215ENST00000514093 ZSWIM8A7E2V4 1837 aa25.81■■□□□ 1.72
SQSTM1-215ENST00000514093 TNNI2P48788 182 aa25.81■■□□□ 1.72
SQSTM1-215ENST00000514093 CACNB3P54284 484 aa25.81■■□□□ 1.72
SQSTM1-215ENST00000514093 BEND3Q5T5X7 828 aa25.81■■□□□ 1.72
SQSTM1-215ENST00000514093 FAM84BQ96KN1 310 aaPredicted RBP25.81■■□□□ 1.72
SQSTM1-215ENST00000514093 SPDYE5A6NIY4 337 aa25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 BTBD19C9JJ37 291 aa25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 TLR2O60603 784 aa25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 LACTBP83111 547 aaPredicted RBP25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 CCDC27Q2M243 656 aa25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 ZKSCAN4Q969J2 545 aaPredicted RBP25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 PUS3Q9BZE2 481 aaKnown RBP25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 IQSEC3Q9UPP2 1182 aaPredicted RBP25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 SNCAIPQ9Y6H5 919 aa25.79■■□□□ 1.72
SQSTM1-215ENST00000514093 VAMP4O75379 141 aa25.78■■□□□ 1.72
SQSTM1-215ENST00000514093 UBE4AQ14139 1066 aa25.78■■□□□ 1.72
SQSTM1-215ENST00000514093 KIF22Q14807 665 aa25.78■■□□□ 1.72
SQSTM1-215ENST00000514093 WDHD1O75717 1129 aaPredicted RBP25.77■■□□□ 1.72
SQSTM1-215ENST00000514093 CETPP11597 493 aa25.77■■□□□ 1.72
SQSTM1-215ENST00000514093 CHAF1AQ13111 956 aaPredicted RBP25.77■■□□□ 1.72
SQSTM1-215ENST00000514093 CCDC184Q52MB2 194 aa25.77■■□□□ 1.72
SQSTM1-215ENST00000514093 CHRDL2Q6WN34 429 aa25.77■■□□□ 1.72
SQSTM1-215ENST00000514093 CEP290O15078 2479 aa25.77■■□□□ 1.72
SQSTM1-215ENST00000514093 SZT2Q5T011 3432 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 GRM8O00222 908 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 IRF6O14896 467 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 MTFR1Q15390 333 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 WRNIP1Q96S55 665 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 FANCIQ9NVI1 1328 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 TRIOBPQ9H2D6 2365 aa25.76■■□□□ 1.71
SQSTM1-215ENST00000514093 ARAP2Q8WZ64 1704 aa25.75■■□□□ 1.71
SQSTM1-215ENST00000514093 ERO1BQ86YB8 467 aa25.75■■□□□ 1.71
SQSTM1-215ENST00000514093 IL16Q14005 1332 aa25.74■■□□□ 1.71
SQSTM1-215ENST00000514093 CTGFP29279 349 aa25.74■■□□□ 1.71
SQSTM1-215ENST00000514093 DPF3Q92784 378 aa25.74■■□□□ 1.71
SQSTM1-215ENST00000514093 C9orf78Q9NZ63 289 aaPredicted RBP25.74■■□□□ 1.71
SQSTM1-215ENST00000514093 EXOSC9Q06265 439 aaKnown RBP25.73■■□□□ 1.71
SQSTM1-215ENST00000514093 SNAPC2Q13487 334 aa25.73■■□□□ 1.71
SQSTM1-215ENST00000514093 SHISA4Q96DD7 197 aa25.73■■□□□ 1.71
SQSTM1-215ENST00000514093 CPA4Q9UI42 421 aa25.73■■□□□ 1.71
SQSTM1-215ENST00000514093 VPS37DQ86XT2 251 aa25.72■■□□□ 1.71
SQSTM1-215ENST00000514093 RBM27Q9P2N5 1060 aaKnown RBP25.72■■□□□ 1.71
SQSTM1-215ENST00000514093 SALL2Q9Y467 1007 aaPredicted RBP25.72■■□□□ 1.71
SQSTM1-215ENST00000514093 C17orf99Q6UX52 265 aa25.71■■□□□ 1.71
SQSTM1-215ENST00000514093 TEKT1Q969V4 418 aa25.71■■□□□ 1.71
SQSTM1-215ENST00000514093 FRAT2O75474 233 aaPredicted RBP25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 GNRH1P01148 92 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 PSMC4P43686 418 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 PPIL2Q13356 520 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 MIGA2Q7L4E1 593 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 FBXO33Q7Z6M2 555 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 SUCLG2Q96I99 432 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 ZCCHC17Q9NP64 241 aaKnown RBP25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 RIPOR2Q9Y4F9 1068 aa25.7■■□□□ 1.7
SQSTM1-215ENST00000514093 PRMT2P55345 433 aa25.69■■□□□ 1.7
SQSTM1-215ENST00000514093 HDLBPQ00341 1268 aaKnown RBP25.69■■□□□ 1.7
SQSTM1-215ENST00000514093 SLC4A10Q6U841 1118 aa25.69■■□□□ 1.7
SQSTM1-215ENST00000514093 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.69■■□□□ 1.7
SQSTM1-215ENST00000514093 TRIM47Q96LD4 638 aa25.69■■□□□ 1.7
SQSTM1-215ENST00000514093 CACNA1FO60840 1977 aa25.69■■□□□ 1.7
SQSTM1-215ENST00000514093 KAZALD1Q96I82 304 aa25.68■■□□□ 1.7
SQSTM1-215ENST00000514093 TMOD2Q9NZR1 351 aa25.68■■□□□ 1.7
SQSTM1-215ENST00000514093 SRRDQ9UH36 339 aa25.68■■□□□ 1.7
SQSTM1-215ENST00000514093 FMNL1O95466 1100 aaPredicted RBP25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 OSBPP22059 807 aa25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 INPP5BP32019 993 aa25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 APOBEC3HQ6NTF7 200 aaKnown RBP25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 FAM83AQ86UY5 434 aa25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 RAET1EQ8TD07 263 aa25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 ZDHHC15Q96MV8 337 aa25.67■■□□□ 1.7
SQSTM1-215ENST00000514093 MROH5Q6ZUA9 1318 aa25.66■■□□□ 1.7
SQSTM1-215ENST00000514093 PPATQ06203 517 aa25.66■■□□□ 1.7
SQSTM1-215ENST00000514093 LRRC24Q50LG9 513 aa25.66■■□□□ 1.7
SQSTM1-215ENST00000514093 TBC1D22AQ8WUA7 517 aa25.66■■□□□ 1.7
SQSTM1-215ENST00000514093 PDHXO00330 501 aa25.65■■□□□ 1.7
SQSTM1-215ENST00000514093 GRK4P32298 578 aa25.65■■□□□ 1.7
SQSTM1-215ENST00000514093 BCAMP50895 628 aa25.65■■□□□ 1.7
SQSTM1-215ENST00000514093 CAVIN4Q5BKX8 364 aa25.65■■□□□ 1.7
SQSTM1-215ENST00000514093 DCAF15Q66K64 600 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms