RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CHGBP05060 677 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 SLC3A2P08195 630 aaKnown RBP11.14□□□□□ -0.63
VCAN-210ENST00000513960 ZSCAN26Q16670 478 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 BRINP3Q76B58 766 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 SMARCE1Q969G3 411 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 GOLPH3LQ9H4A5 285 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 GPR108Q9NPR9 543 aa11.14□□□□□ -0.63
VCAN-210ENST00000513960 ABCC6O95255 1503 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 CASQ1P31415 396 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 KARSQ15046 597 aaKnown RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 IQCB1Q15051 598 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 CCDC102AQ96A19 550 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 ZNF594Q96JF6 807 aaPredicted RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 HELLSQ9NRZ9 838 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 ZNF609O15014 1411 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 CPLX1O14810 134 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 TRIM66O15016 1216 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 TOP1P11387 765 aaKnown RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 CYP2C19P33261 490 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 LRRFIP1Q32MZ4 808 aaKnown RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 DPCR1Q3MIW9 517 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 NYAP1Q6ZVC0 841 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 ATG9AQ7Z3C6 839 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 PTPDC1A2A3K4 754 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 SMC1AQ14683 1233 aaKnown RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 MRPS27Q92552 414 aaKnown RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 ZSCAN16Q9H4T2 348 aaPredicted RBP11.13□□□□□ -0.63
VCAN-210ENST00000513960 ARFGAP3Q9NP61 516 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 TMOD3Q9NYL9 352 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 VPS18Q9P253 973 aa11.13□□□□□ -0.63
VCAN-210ENST00000513960 A0A1B0GUL7 405 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 ANKRD65E5RJM6 399 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 CDC25BP30305 580 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 FKBP4Q02790 459 aaKnown RBP eCLIP11.12□□□□□ -0.63
VCAN-210ENST00000513960 FAM160A1Q05DH4 1040 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 LRRC24Q50LG9 513 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 CCDC158Q5M9N0 1113 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 JCADQ9P266 1359 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 COL18A1P39060 1754 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 SH3TC1Q8TE82 1336 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 MARCKSP29966 332 aaPredicted RBP11.12□□□□□ -0.63
VCAN-210ENST00000513960 UBASH3AP57075 661 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 E4F1Q66K89 784 aaPredicted RBP11.12□□□□□ -0.63
VCAN-210ENST00000513960 DHX32Q7L7V1 743 aaKnown RBP11.12□□□□□ -0.63
VCAN-210ENST00000513960 RNF216Q9NWF9 866 aaPredicted RBP11.12□□□□□ -0.63
VCAN-210ENST00000513960 PUF60Q9UHX1 559 aaKnown RBP11.12□□□□□ -0.63
VCAN-210ENST00000513960 AFDNP55196 1824 aaKnown RBP11.12□□□□□ -0.63
VCAN-210ENST00000513960 KIF6Q6ZMV9 814 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 KLHL34Q8N239 644 aa11.12□□□□□ -0.63
VCAN-210ENST00000513960 CCP110O43303 1012 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 PLA2G4AP47712 749 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 RESTQ13127 1097 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 DSCC1Q9BVC3 393 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 CARD10Q9BWT7 1032 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 FEZ2Q9UHY8 353 aaPredicted RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 ETF1P62495 437 aaKnown RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 HSP90B2PQ58FF3 399 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 TTC39AQ5SRH9 613 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 CCDC12Q8WUD4 166 aaPredicted RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 CCDC85AQ96PX6 553 aaPredicted RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 AKAP2Q9Y2D5 859 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 FHOD1Q9Y613 1164 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 RNF113AO15541 343 aaKnown RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 WASHC4Q2M389 1173 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 DHX40Q8IX18 779 aaKnown RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 CPLX3Q8WVH0 158 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 ATG3Q9NT62 314 aa11.11□□□□□ -0.63
VCAN-210ENST00000513960 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.11□□□□□ -0.63
VCAN-210ENST00000513960 CIAO1O76071 339 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 GTF2A1P52655 376 aaPredicted RBP11.1□□□□□ -0.63
VCAN-210ENST00000513960 ZMYM1Q5SVZ6 1142 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 OLFM4Q6UX06 510 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 GPATCH11Q8N954 259 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 ORC3Q9UBD5 711 aaPredicted RBP11.1□□□□□ -0.63
VCAN-210ENST00000513960 FANCCQ00597 558 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 TCIRG1Q13488 830 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 NKX1-1Q15270 411 aaPredicted RBP11.1□□□□□ -0.63
VCAN-210ENST00000513960 NOM1Q5C9Z4 860 aaKnown RBP11.1□□□□□ -0.63
VCAN-210ENST00000513960 ARMCX5Q6P1M9 558 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 PUS3Q9BZE2 481 aaKnown RBP11.1□□□□□ -0.63
VCAN-210ENST00000513960 SLAIN2Q9P270 581 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 PALLDQ8WX93 1383 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 ATP1A3P13637 1013 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 ATP2B1P20020 1258 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 SLFNL1Q499Z3 407 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 TICAM2Q86XR7 235 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 TEX13AQ9BXU3 409 aaPredicted RBP11.1□□□□□ -0.63
VCAN-210ENST00000513960 ARFGEF2Q9Y6D5 1785 aa11.1□□□□□ -0.63
VCAN-210ENST00000513960 ZSCAN12O43309 604 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 PPP2R3AQ06190 1150 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 SCRN1Q12765 414 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 SARM1Q6SZW1 724 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 LLPHQ9BRT6 129 aaKnown RBP11.09□□□□□ -0.63
VCAN-210ENST00000513960 STARD3NLO95772 234 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 HSPD1P10809 573 aaKnown RBP11.09□□□□□ -0.63
VCAN-210ENST00000513960 NDUFA8P51970 172 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 IFIT5Q13325 482 aaKnown RBP11.09□□□□□ -0.63
VCAN-210ENST00000513960 DESI2Q9BSY9 194 aa11.09□□□□□ -0.63
VCAN-210ENST00000513960 PKD1L3Q7Z443 1732 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms