RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TRIOBPQ9H2D6 2365 aa13.99□□□□□ -0.17
DDX41-216ENST00000513562 DLL1O00548 723 aa13.99□□□□□ -0.17
DDX41-216ENST00000513562 DPF3Q92784 378 aa13.99□□□□□ -0.17
DDX41-216ENST00000513562 TMEM39BQ9GZU3 492 aa13.99□□□□□ -0.17
DDX41-216ENST00000513562 MYH16Q9H6N6 1097 aa13.99□□□□□ -0.17
DDX41-216ENST00000513562 TDRD3Q9H7E2 651 aaKnown RBP13.99□□□□□ -0.17
DDX41-216ENST00000513562 TCP10L2B9ZVM9 353 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 BTBD19C9JJ37 291 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 CETPP11597 493 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 IFIT5Q13325 482 aaKnown RBP13.98□□□□□ -0.17
DDX41-216ENST00000513562 MTFR1Q15390 333 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 MFSD14BQ5SR56 506 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 DZIP1LQ8IYY4 767 aaKnown RBP13.98□□□□□ -0.17
DDX41-216ENST00000513562 TTF2Q9UNY4 1162 aaKnown RBP13.98□□□□□ -0.17
DDX41-216ENST00000513562 SNCAIPQ9Y6H5 919 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 LAMA3Q16787 3333 aa13.98□□□□□ -0.17
DDX41-216ENST00000513562 COL6A3P12111 3177 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 TNNI2P48788 182 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 FOXO4P98177 505 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 C17orf99Q6UX52 265 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 ERO1BQ86YB8 467 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 SLC17A8Q8NDX2 589 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 LINS1Q8NG48 757 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 TDRD7Q8NHU6 1098 aaKnown RBP13.97□□□□□ -0.17
DDX41-216ENST00000513562 NKX2-3Q8TAU0 364 aa13.97□□□□□ -0.17
DDX41-216ENST00000513562 IRF6O14896 467 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 SLC4A2P04920 1241 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 CTGFP29279 349 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 CRKP46108 304 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 GJA8P48165 433 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 FLIIQ13045 1269 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 SNAPC2Q13487 334 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 DNAAF4Q8WXU2 420 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 TSR2Q969E8 191 aaKnown RBP13.96□□□□□ -0.17
DDX41-216ENST00000513562 HTATIP2Q9BUP3 242 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 SRRDQ9UH36 339 aa13.96□□□□□ -0.17
DDX41-216ENST00000513562 A0A0C4DFX4 3053 aa13.96□□□□□ -0.18
DDX41-216ENST00000513562 GJB1P08034 283 aa13.95□□□□□ -0.18
DDX41-216ENST00000513562 PPIL2Q13356 520 aa13.95□□□□□ -0.18
DDX41-216ENST00000513562 TRIM47Q96LD4 638 aa13.95□□□□□ -0.18
DDX41-216ENST00000513562 WRNIP1Q96S55 665 aa13.95□□□□□ -0.18
DDX41-216ENST00000513562 CEP290O15078 2479 aa13.95□□□□□ -0.18
DDX41-216ENST00000513562 ADGRA2Q96PE1 1338 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 A0A1W2PPC1 479 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 GRK4P32298 578 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 PSMC4P43686 418 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 FKBP5Q13451 457 aaPredicted RBP13.94□□□□□ -0.18
DDX41-216ENST00000513562 TWISTNBQ3B726 338 aaPredicted RBP13.94□□□□□ -0.18
DDX41-216ENST00000513562 ZKSCAN4Q969J2 545 aaPredicted RBP13.94□□□□□ -0.18
DDX41-216ENST00000513562 CHMP3Q9Y3E7 222 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 RIPOR2Q9Y4F9 1068 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 ZSWIM8A7E2V4 1837 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 A0A1B0GUL6 1792 aa13.94□□□□□ -0.18
DDX41-216ENST00000513562 ARAP2Q8WZ64 1704 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 ZBTB7BO15156 539 aaPredicted RBP13.93□□□□□ -0.18
DDX41-216ENST00000513562 PLIN1O60240 522 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 CCL5P13501 91 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 OSBPP22059 807 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 HOXD10P28358 340 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 HIBADHP31937 336 aaKnown RBP13.93□□□□□ -0.18
DDX41-216ENST00000513562 GYG1P46976 350 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 UBE4AQ14139 1066 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 LDHAL6AQ6ZMR3 332 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 RAET1EQ8TD07 263 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 ZNF594Q96JF6 807 aaPredicted RBP13.93□□□□□ -0.18
DDX41-216ENST00000513562 CPA4Q9UI42 421 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 NR2E3Q9Y5X4 410 aa13.93□□□□□ -0.18
DDX41-216ENST00000513562 MYPNQ86TC9 1320 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 ECM2O94769 699 aaPredicted RBP13.92□□□□□ -0.18
DDX41-216ENST00000513562 CACNB3P54284 484 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 HDLBPQ00341 1268 aaKnown RBP13.92□□□□□ -0.18
DDX41-216ENST00000513562 PPATQ06203 517 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 GRIK5Q16478 980 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 CCDC57Q2TAC2 916 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 LMBR1LQ6UX01 489 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 ANKRD23Q86SG2 305 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 FAM83AQ86UY5 434 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 HOOK2Q96ED9 719 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 FAM84BQ96KN1 310 aaPredicted RBP13.92□□□□□ -0.18
DDX41-216ENST00000513562 RNF208Q9H0X6 261 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 CNNM1Q9NRU3 951 aa13.92□□□□□ -0.18
DDX41-216ENST00000513562 RPAP1Q9BWH6 1393 aaPredicted RBP13.92□□□□□ -0.18
DDX41-216ENST00000513562 SOX1O00570 391 aaPredicted RBP13.91□□□□□ -0.18
DDX41-216ENST00000513562 FARP2O94887 1054 aaPredicted RBP13.91□□□□□ -0.18
DDX41-216ENST00000513562 FMNL1O95466 1100 aaPredicted RBP13.91□□□□□ -0.18
DDX41-216ENST00000513562 TAF7LQ5H9L4 462 aa13.91□□□□□ -0.18
DDX41-216ENST00000513562 EPHA10Q5JZY3 1008 aa13.91□□□□□ -0.18
DDX41-216ENST00000513562 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.91□□□□□ -0.18
DDX41-216ENST00000513562 U2AF1L4Q8WU68 220 aaKnown RBP13.91□□□□□ -0.18
DDX41-216ENST00000513562 PDHXO00330 501 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 UBXN2AP68543 259 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 PRKCZQ05513 592 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 FKBP1CQ5VVH2 108 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 TEKT1Q969V4 418 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 ZDHHC15Q96MV8 337 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 KCNH4Q9UQ05 1017 aa13.9□□□□□ -0.18
DDX41-216ENST00000513562 DDX10Q13206 875 aaKnown RBP13.89□□□□□ -0.19
DDX41-216ENST00000513562 MOGSQ13724 837 aa13.89□□□□□ -0.19
DDX41-216ENST00000513562 BEND3Q5T5X7 828 aa13.89□□□□□ -0.19
DDX41-216ENST00000513562 DCAF15Q66K64 600 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms