RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LMBR1Q8WVP7 490 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 KIAA1468Q9P260 1216 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 PPARDQ03181 441 aa13.71□□□□□ -0.22
LIMCH1-213ENST00000511496 RESTQ13127 1097 aa13.71□□□□□ -0.22
LIMCH1-213ENST00000511496 C3orf20Q8ND61 904 aa13.71□□□□□ -0.22
LIMCH1-213ENST00000511496 TBC1D31Q96DN5 1066 aa13.71□□□□□ -0.22
LIMCH1-213ENST00000511496 XAGE2Q96GT9 111 aa13.71□□□□□ -0.22
LIMCH1-213ENST00000511496 ADGRF5Q8IZF2 1346 aa13.71□□□□□ -0.22
LIMCH1-213ENST00000511496 GNAI2P04899 355 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 PYGLP06737 847 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 IFT88Q13099 833 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 USP28Q96RU2 1077 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 YIPF3Q9GZM5 350 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 CBFA2T2O43439 604 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 FCHSD2O94868 740 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 PECAM1P16284 738 aaPredicted RBP13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 SMTNP53814 917 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 NCAPHQ15003 741 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 TMEM139Q8IV31 216 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 CCDC13Q8IYE1 715 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 RSRC1Q96IZ7 334 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 ATP2C2O75185 946 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 A1BGP04217 495 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 SLC4A2P04920 1241 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 AARSP49588 968 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 ATP1A2P50993 1020 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 GUCY1B3Q02153 619 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 NCAPH2Q6IBW4 605 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 KIAA1328Q86T90 577 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 PARP9Q8IXQ6 854 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 MYO6Q9UM54 1294 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 SHANK2Q9UPX8 1470 aa13.7□□□□□ -0.22
LIMCH1-213ENST00000511496 KIF24Q5T7B8 1368 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 CTAGE9A4FU28 777 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 KIF4AO95239 1232 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 SLC3A2P08195 630 aaKnown RBP13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 ENGASEQ8NFI3 743 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 CCDC148Q8NFR7 591 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 TOPBP1Q92547 1522 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 SF3A1Q15459 793 aaKnown RBP13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 VSTM4Q8IW00 320 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 CNTROBQ8N137 903 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 KLHL23Q8NBE8 558 aa13.69□□□□□ -0.22
LIMCH1-213ENST00000511496 CCDC175P0C221 793 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 CABP2Q9NPB3 220 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 PICK1Q9NRD5 415 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 BIN2Q9UBW5 565 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 SETD1BQ9UPS6 1966 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 HMGXB3Q12766 1538 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 DISP1Q96F81 1524 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 GOLGA6BA6NDN3 693 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 HDGFP51858 240 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 TBC1D25Q3MII6 688 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 TMEM132EQ6IEE7 984 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 SLC35F6Q8N357 371 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 CPLX3Q8WVH0 158 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 STAP2Q9UGK3 403 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 EPB41L2O43491 1005 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 NDUFA8P51970 172 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 ACCSLQ4AC99 568 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 COG1Q8WTW3 980 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 NUP133Q8WUM0 1156 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 CDC5LQ99459 802 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 SENP3Q9H4L4 574 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 GRIN2DO15399 1336 aa13.68□□□□□ -0.22
LIMCH1-213ENST00000511496 SOWAHDA6NJG2 315 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 STX10O60499 249 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 RASSF9O75901 435 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 CSB-PGBD3P0DP91 1061 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 ICA1Q05084 483 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 HSP90AB2PQ58FF8 381 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 BLOC1S2Q6QNY1 142 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 MICALCLQ6ZW33 695 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 FAM228AQ86W67 206 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 VIPAS39Q9H9C1 493 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 RCOR1Q9UKL0 485 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 MADDQ8WXG6 1647 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 FANCAO15360 1455 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 MYO1BO43795 1136 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 PFKFB2O60825 505 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 USP4Q13107 963 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 CAPRIN2Q6IMN6 1127 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 CYB5D1Q6P9G0 228 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 VCPKMTQ9H867 229 aa13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 TPX2Q9ULW0 747 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 MRPS27Q92552 414 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-213ENST00000511496 TTC37Q6PGP7 1564 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 KIAA0232Q92628 1395 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 AGPSO00116 658 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 MYBL1P10243 752 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 PIP4K2BP78356 416 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 FKBP15Q5T1M5 1219 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 TLDC1Q6P9B6 456 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 RIPOR2Q9Y4F9 1068 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 RANBP1P43487 201 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 RAB27AP51159 221 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 NLRP12P59046 1061 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 SMARCC2Q8TAQ2 1214 aa13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 HAUS2Q9NVX0 235 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms