RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 DCPSQ96C86 337 aaKnown RBP13.96□□□□□ -0.17
LIMCH1-210ENST00000509454 MMP14P50281 582 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 SPTY2D1Q68D10 685 aaPredicted RBP13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 B4GALNT3Q6L9W6 998 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 TBC1D9Q6ZT07 1266 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 ERICH6Q7L0X2 663 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 CNTROBQ8N137 903 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 GPATCH3Q96I76 525 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 GGA3Q9NZ52 723 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 RAI14Q9P0K7 980 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 LRP2BPQ9P2M1 347 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 MYO1BO43795 1136 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 IGHDP01880 384 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 PRDX5P30044 214 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 CRKP46108 304 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 NBPF9Q3BBW0 867 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 ANGEL2Q5VTE6 544 aaKnown RBP13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 TEKT1Q969V4 418 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 DNAJC2Q99543 621 aaKnown RBP13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 SUGT1Q9Y2Z0 365 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 PCDHAC2Q9Y5I4 1007 aa13.95□□□□□ -0.18
LIMCH1-210ENST00000509454 ASTN2O75129 1339 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 PDS5AQ29RF7 1337 aaKnown RBP13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 ZAP70P43403 619 aa13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 ZC3H15Q8WU90 426 aaKnown RBP13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 VEZTQ9HBM0 779 aa13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 SERPINA10Q9UK55 444 aa13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 NDUFB9Q9Y6M9 179 aa13.94□□□□□ -0.18
LIMCH1-210ENST00000509454 SALL1Q9NSC2 1324 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 CLRN2A0PK11 232 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 WNT10BO00744 389 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 DIXDC1Q155Q3 683 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 KRT26Q7Z3Y9 468 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 USP48Q86UV5 1035 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 SULF1Q8IWU6 871 aa13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 ZNF512BQ96KM6 892 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 GLIS2Q9BZE0 524 aaPredicted RBP13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 SCAF8Q9UPN6 1271 aaKnown RBP13.93□□□□□ -0.18
LIMCH1-210ENST00000509454 ADAMTSL1Q8N6G6 1762 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 SPDYE2BA6NHP3 402 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 SPDYE6P0CI01 402 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 CDC37L1Q7L3B6 337 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 SLF2Q8IX21 1173 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 BOLA2Q9H3K6 86 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 ZNF408Q9H9D4 720 aa13.92□□□□□ -0.18
LIMCH1-210ENST00000509454 ADM5C9JUS6 153 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 TRAF5O00463 557 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 IDH1O75874 414 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 GSTO1P78417 241 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 TSHZ3Q63HK5 1081 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 PRMT6Q96LA8 375 aaPredicted RBP13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 LNPKQ9C0E8 428 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 PIH1D3Q9NQM4 214 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 ECHDC1Q9NTX5 307 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 TMOD2Q9NZR1 351 aa13.91□□□□□ -0.18
LIMCH1-210ENST00000509454 GOLIM4O00461 696 aa13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 ZBTB22O15209 634 aa13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 CYP2E1P05181 493 aaPredicted RBP13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 HDLBPQ00341 1268 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 MECOMQ03112 1051 aa13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 HHIPL2Q6UWX4 724 aa13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 APOBEC3FQ8IUX4 373 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 MTMR14Q8NCE2 650 aa13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 TDRD3Q9H7E2 651 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 PGAP2Q9UHJ9 254 aa13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 POLR2AP24928 1970 aaKnown RBP13.9□□□□□ -0.18
LIMCH1-210ENST00000509454 ATP5JP18859 108 aa13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 TTF1Q15361 905 aaPredicted RBP13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 NAA16Q6N069 864 aaPredicted RBP13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 SMC5Q8IY18 1101 aa13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 OTUD7AQ8TE49 926 aaPredicted RBP13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 ZDHHC15Q96MV8 337 aa13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 NOL10Q9BSC4 688 aaKnown RBP13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 ZNF70Q9UC06 446 aaPredicted RBP13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 DAGLAQ9Y4D2 1042 aa13.9□□□□□ -0.19
LIMCH1-210ENST00000509454 AKAP11Q9UKA4 1901 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 TCP10L2B9ZVM9 353 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 ITGBL1O95965 494 aaPredicted RBP13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 LDHCP07864 332 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 MX1P20591 662 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 FMR1Q06787 632 aaKnown RBP eCLIP13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 MAP3K12Q12852 859 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 DLK2Q6UY11 383 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 ZBED3Q96IU2 234 aaPredicted RBP13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 ANTXR1Q9H6X2 564 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 PAG1Q9NWQ8 432 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 AOX1Q06278 1338 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 PITPNM2Q9BZ72 1349 aa13.89□□□□□ -0.19
LIMCH1-210ENST00000509454 MYH2Q9UKX2 1941 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 ERC2O15083 957 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 CELF2O95319 508 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 CACNB3P54284 484 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 SPDYE2Q495Y8 402 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 CHD1LQ86WJ1 897 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 NSUN4Q96CB9 384 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 EDC3Q96F86 508 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 MRIQ9BWK5 157 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 USP40Q9NVE5 1235 aa13.88□□□□□ -0.19
LIMCH1-210ENST00000509454 MAP4K4O95819 1239 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms