RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	TLR2	O60603	784 aa		11.71	□□□□□ -0.53
UBE2D3-223	ENST00000508249	HSP90B1	P14625	803 aa	Known RBP	11.71	□□□□□ -0.53
UBE2D3-223	ENST00000508249		A0A1W2PPC1	479 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249		F8W031	263 aa	Predicted RBP	11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GJA8	P48165	433 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CASP7	P55210	303 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SUPT20HL1	Q3ZLR7	823 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SPDYE2	Q495Y8	402 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	C15orf52	Q6ZUT6	534 aa	Known RBP	11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	MIER1	Q8N108	512 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	TRIM47	Q96LD4	638 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	VEZT	Q9HBM0	779 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ZFYVE28	Q9HCC9	887 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SNCAIP	Q9Y6H5	919 aa		11.7	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SPDYE5	A6NIY4	337 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	BTBD19	C9JJ37	291 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	VAMP4	O75379	141 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CT47B1	P0C2W7	299 aa	Predicted RBP	11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	IL1R1	P14778	569 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	FKBP1A	P62942	108 aa	Known RBP	11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CHRND	Q07001	517 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CWF19L2	Q2TBE0	894 aa	Known RBP	11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	TSPYL6	Q8N831	410 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	DPF3	Q92784	378 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	JAG2	Q9Y219	1238 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	MAP3K2	Q9Y2U5	619 aa		11.69	□□□□□ -0.54
UBE2D3-223	ENST00000508249	NEURL1B	A8MQ27	555 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GJB1	P08034	283 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ITGA6	P23229	1130 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GTF2A2	P52657	109 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	EXOSC9	Q06265	439 aa	Known RBP	11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	C17orf99	Q6UX52	265 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	PLA2G12B	Q9BX93	195 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	TMEM39B	Q9GZU3	492 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ZCCHC17	Q9NP64	241 aa	Known RBP	11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CACNA1F	O60840	1977 aa		11.68	□□□□□ -0.54
UBE2D3-223	ENST00000508249	PHIP	Q8WWQ0	1821 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	DOCK3	Q8IZD9	2030 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	DDX60L	Q5H9U9	1706 aa	Known RBP	11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249		H7C1W4	665 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CSF1R	P07333	972 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	CCL5	P13501	91 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	OSBP	P22059	807 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SLFN5	Q08AF3	891 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	NEXN	Q0ZGT2	675 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	MOGS	Q13724	837 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	KSR2	Q6VAB6	950 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ZNF70	Q9UC06	446 aa	Predicted RBP	11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SRRD	Q9UH36	339 aa		11.67	□□□□□ -0.54
UBE2D3-223	ENST00000508249	PI4KAP2	A4QPH2	592 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	IRF6	O14896	467 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	TAF5L	O75529	589 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GNRH1	P01148	92 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SLC4A2	P04920	1241 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	PRMT2	P55345	433 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ARHGEF6	Q15052	776 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GRIK5	Q16478	980 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249		Q7L0L9	218 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	UBE3B	Q7Z3V4	1068 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	PI4KAP1	Q8N8J0	262 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ANKRD2	Q9GZV1	360 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	TDRD3	Q9H7E2	651 aa	Known RBP	11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	RIPOR2	Q9Y4F9	1068 aa		11.66	□□□□□ -0.54
UBE2D3-223	ENST00000508249	FAM205A	Q6ZU69	1335 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	COL2A1	P02458	1487 aa	Predicted RBP	11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	MYO1B	O43795	1136 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	ECM2	O94769	699 aa	Predicted RBP	11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	FARP2	O94887	1054 aa	Predicted RBP	11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GRK4	P32298	578 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	IGHMBP2	P38935	993 aa	Known RBP	11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	MAP3K9	P80192	1104 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	FLII	Q13045	1269 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	HELB	Q8NG08	1087 aa	Predicted RBP	11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	U2AF1L4	Q8WU68	220 aa	Known RBP	11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	GDF15	Q99988	308 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	HTATIP2	Q9BUP3	242 aa		11.65	□□□□□ -0.54
UBE2D3-223	ENST00000508249	PLXNB2	O15031	1838 aa		11.65	□□□□□ -0.55
UBE2D3-223	ENST00000508249	DOCK2	Q92608	1830 aa		11.65	□□□□□ -0.55
UBE2D3-223	ENST00000508249	MYH13	Q9UKX3	1938 aa		11.64	□□□□□ -0.55
UBE2D3-223	ENST00000508249	PSMC4	P43686	418 aa		11.64	□□□□□ -0.55
UBE2D3-223	ENST00000508249	TRMT2A	Q8IZ69	625 aa	Known RBP	11.64	□□□□□ -0.55
UBE2D3-223	ENST00000508249	UNC93B1	Q9H1C4	597 aa		11.64	□□□□□ -0.55
UBE2D3-223	ENST00000508249	STAP2	Q9UGK3	403 aa		11.64	□□□□□ -0.55
UBE2D3-223	ENST00000508249	CPA4	Q9UI42	421 aa		11.64	□□□□□ -0.55
UBE2D3-223	ENST00000508249	MYPN	Q86TC9	1320 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	TCP10L2	B9ZVM9	353 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	CETP	P11597	493 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	PRKCZ	Q05513	592 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	FKBP5	Q13451	457 aa	Predicted RBP	11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	TNFAIP1	Q13829	316 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	ALDH1L2	Q3SY69	923 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	GPR153	Q6NV75	609 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	G2E3	Q7L622	706 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	DZIP1L	Q8IYY4	767 aa	Known RBP	11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	NKX2-3	Q8TAU0	364 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	SERPINA10	Q9UK55	444 aa		11.63	□□□□□ -0.55
UBE2D3-223	ENST00000508249	GABRQ	Q9UN88	632 aa		11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms