RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CFHR5Q9BXR6 569 aa14.48□□□□□ -0.09
HMGCS1-204ENST00000507293 R3HDMLQ9H3Y0 253 aa14.48□□□□□ -0.09
HMGCS1-204ENST00000507293 TCP10L2B9ZVM9 353 aa14.47□□□□□ -0.09
HMGCS1-204ENST00000507293 USP2O75604 605 aaPredicted RBP14.47□□□□□ -0.09
HMGCS1-204ENST00000507293 CDAN1Q8IWY9 1227 aa14.47□□□□□ -0.09
HMGCS1-204ENST00000507293 TBC1D22AQ8WUA7 517 aa14.47□□□□□ -0.09
HMGCS1-204ENST00000507293 HPS5Q9UPZ3 1129 aa14.47□□□□□ -0.09
HMGCS1-204ENST00000507293 UNCXA6NJT0 531 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 FKTNO75072 461 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 ALDH1A1P00352 501 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 FGFR2P21802 821 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 GJA5P36382 358 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 RFX5P48382 616 aaPredicted RBP14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 BCAMP50895 628 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 PUM3Q15397 648 aaKnown RBP14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 PKN2Q16513 984 aaKnown RBP14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 IFNL1Q8IU54 200 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 ANKRD13AQ8IZ07 590 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 TEPSINQ96N21 525 aa14.46□□□□□ -0.09
HMGCS1-204ENST00000507293 KIF16BQ96L93 1317 aa14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 EYA2O00167 538 aa14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 IGF2BP3O00425 579 aaKnown RBP eCLIP14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 IFIT1P09914 478 aaKnown RBP14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 TNNI2P48788 182 aa14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 INHBEP58166 350 aa14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 HDLBPQ00341 1268 aaKnown RBP14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 TRMT2AQ8IZ69 625 aaKnown RBP14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 TEKT1Q969V4 418 aa14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 TMEM39BQ9GZU3 492 aa14.45□□□□□ -0.1
HMGCS1-204ENST00000507293 UBTFL1P0CB47 393 aaPredicted RBP14.44□□□□□ -0.1
HMGCS1-204ENST00000507293 SLC5A1P13866 664 aa14.44□□□□□ -0.1
HMGCS1-204ENST00000507293 ELP3Q9H9T3 547 aa14.44□□□□□ -0.1
HMGCS1-204ENST00000507293 MAST3O60307 1309 aa14.43□□□□□ -0.1
HMGCS1-204ENST00000507293 CACNB3P54284 484 aa14.43□□□□□ -0.1
HMGCS1-204ENST00000507293 FBXO46Q6PJ61 603 aaPredicted RBP14.43□□□□□ -0.1
HMGCS1-204ENST00000507293 OPTNQ96CV9 577 aa14.43□□□□□ -0.1
HMGCS1-204ENST00000507293 NOB1Q9ULX3 412 aaKnown RBP14.43□□□□□ -0.1
HMGCS1-204ENST00000507293 AK9Q5TCS8 1911 aa14.43□□□□□ -0.1
HMGCS1-204ENST00000507293 CT47B1P0C2W7 299 aaPredicted RBP14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 VGLL4Q14135 290 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 ATG9AQ7Z3C6 839 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 CNKSR2Q8WXI2 1034 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 LPIN2Q92539 896 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 ZDHHC15Q96MV8 337 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 SIL1Q9H173 461 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 TMOD2Q9NZR1 351 aa14.42□□□□□ -0.1
HMGCS1-204ENST00000507293 CRHR2Q13324 411 aa14.41□□□□□ -0.1
HMGCS1-204ENST00000507293 OTUD7BQ6GQQ9 843 aa14.41□□□□□ -0.1
HMGCS1-204ENST00000507293 PTPN18Q99952 460 aa14.41□□□□□ -0.1
HMGCS1-204ENST00000507293 API5Q9BZZ5 524 aaKnown RBP14.41□□□□□ -0.1
HMGCS1-204ENST00000507293 SUGT1Q9Y2Z0 365 aa14.41□□□□□ -0.1
HMGCS1-204ENST00000507293 MYH2Q9UKX2 1941 aa14.41□□□□□ -0.1
HMGCS1-204ENST00000507293 RPAP1Q9BWH6 1393 aaPredicted RBP14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 TESPA1A2RU30 521 aaPredicted RBP14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 CIAO1O76071 339 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 MAP3K9P80192 1104 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 ATP2B3Q16720 1220 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 APOBEC3HQ6NTF7 200 aaKnown RBP14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 HHIPL2Q6UWX4 724 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 WDR66Q8TBY9 1149 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 MRIQ9BWK5 157 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 TRIM17Q9Y577 477 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 CSADQ9Y600 493 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 LRRFIP2Q9Y608 721 aaKnown RBP14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 DOCK2Q92608 1830 aa14.4□□□□□ -0.1
HMGCS1-204ENST00000507293 CCER2I3L3R5 266 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 FAM83AQ86UY5 434 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 OTUD5Q96G74 571 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 ERO1AQ96HE7 468 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 MS4A4AQ96JQ5 239 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 MEIS3Q99687 375 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 CEP126Q9P2H0 1117 aa14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 PA2G4Q9UQ80 394 aaKnown RBP14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 RBBP6Q7Z6E9 1792 aaKnown RBP14.39□□□□□ -0.11
HMGCS1-204ENST00000507293 CCL15-CCL14A0A0B4J2E2 113 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 RARSP54136 660 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 CCL15Q16663 113 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 FKBP1CQ5VVH2 108 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 OTOP1Q7RTM1 612 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 CD99L2Q8TCZ2 262 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 BRI3BPQ8WY22 251 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 WRNIP1Q96S55 665 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 DAGLAQ9Y4D2 1042 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 SNCAIPQ9Y6H5 919 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 ZSWIM8A7E2V4 1837 aa14.38□□□□□ -0.11
HMGCS1-204ENST00000507293 PDE4DIPQ5VU43 2346 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 SPDYE5A6NIY4 337 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 PRDX5P30044 214 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 IL15P40933 162 aaPredicted RBP14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 GTF2A2P52657 109 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 DIXDC1Q155Q3 683 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 HOOK2Q96ED9 719 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 HDAC5Q9UQL6 1122 aa14.37□□□□□ -0.11
HMGCS1-204ENST00000507293 PHKA1P46020 1223 aa14.36□□□□□ -0.11
HMGCS1-204ENST00000507293 TAF1CQ15572 869 aaPredicted RBP14.36□□□□□ -0.11
HMGCS1-204ENST00000507293 ZKSCAN4Q969J2 545 aaPredicted RBP14.36□□□□□ -0.11
HMGCS1-204ENST00000507293 GNL3LQ9NVN8 582 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms