RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.61□□□□□ -1.67
TCOF1-208ENST00000506063 CD320Q9NPF0 282 aa4.61□□□□□ -1.67
TCOF1-208ENST00000506063 CXXC1Q9P0U4 656 aaPredicted RBP4.61□□□□□ -1.67
TCOF1-208ENST00000506063 OGDHLQ9ULD0 1010 aa4.61□□□□□ -1.67
TCOF1-208ENST00000506063 PCDHAC2Q9Y5I4 1007 aa4.61□□□□□ -1.67
TCOF1-208ENST00000506063 ZNF804BA4D1E1 1349 aa4.61□□□□□ -1.67
TCOF1-208ENST00000506063 DMDP11532 3685 aa4.61□□□□□ -1.67
TCOF1-208ENST00000506063 ACACBO00763 2458 aa4.61□□□□□ -1.67
TCOF1-208ENST00000506063 MAP1BP46821 2468 aaKnown RBP4.61□□□□□ -1.67
TCOF1-208ENST00000506063 NCOR2Q9Y618 2525 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 USP17L3A6NCW0 530 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 USP17L4A6NCW7 530 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 PRR33A8MZF0 331 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 FMNL1O95466 1100 aaPredicted RBP4.6□□□□□ -1.67
TCOF1-208ENST00000506063 HMOX1P09601 288 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 IREB2P48200 963 aaKnown RBP4.6□□□□□ -1.67
TCOF1-208ENST00000506063 FLT3LGP49771 235 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 MOGSQ13724 837 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 VGLL4Q14135 290 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 GIGYF2Q6Y7W6 1299 aaKnown RBP4.6□□□□□ -1.67
TCOF1-208ENST00000506063 DDX46Q7L014 1031 aaKnown RBP4.6□□□□□ -1.67
TCOF1-208ENST00000506063 USP17L1Q7RTZ2 530 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 MTMR14Q8NCE2 650 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 ANKS1AQ92625 1134 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 SIN3AQ96ST3 1273 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 EYA3Q99504 573 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 ZBTB3Q9H5J0 574 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 PPP2R3BQ9Y5P8 575 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 ZFHX2Q9C0A1 2572 aaPredicted RBP4.6□□□□□ -1.67
TCOF1-208ENST00000506063 A0A0G2JMZ2 1700 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 SPEF2Q9C093 1822 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 TECTAO75443 2155 aa4.6□□□□□ -1.67
TCOF1-208ENST00000506063 SPDYE5A6NIY4 337 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 TEFQ10587 303 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 TRIM32Q13049 653 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 PARP10Q53GL7 1025 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 GPR179Q6PRD1 2367 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 GVINP1Q7Z2Y8 2422 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 PPP1R42Q7Z4L9 355 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 ZBTB38Q8NAP3 1195 aaPredicted RBP4.59□□□□□ -1.67
TCOF1-208ENST00000506063 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.59□□□□□ -1.67
TCOF1-208ENST00000506063 PPM1EQ8WY54 764 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 TEPSINQ96N21 525 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 UTP14AQ9BVJ6 771 aaKnown RBP4.59□□□□□ -1.67
TCOF1-208ENST00000506063 ZC3H12CQ9C0D7 883 aaKnown RBP4.59□□□□□ -1.67
TCOF1-208ENST00000506063 ZNF576Q9H609 170 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 SNCAIPQ9Y6H5 919 aa4.59□□□□□ -1.67
TCOF1-208ENST00000506063 KMT2EQ8IZD2 1858 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 PHIPQ8WWQ0 1821 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 UNC79Q9P2D8 2635 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 BTBD11A6QL63 1104 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 IRF6O14896 467 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 TLL1O43897 1013 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 UFL1O94874 794 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 U2AF1L5P0DN76 240 aaPredicted RBP4.58□□□□□ -1.68
TCOF1-208ENST00000506063 CETPP11597 493 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 DNAJB2P25686 324 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 EPHB4P54760 987 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 FCGRTP55899 365 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 U2AF1Q01081 240 aaKnown RBP eCLIP4.58□□□□□ -1.68
TCOF1-208ENST00000506063 PDE3AQ14432 1141 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 SF3B3Q15393 1217 aaKnown RBP4.58□□□□□ -1.68
TCOF1-208ENST00000506063 MAP3K21Q5TCX8 1036 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 NGEFQ8N5V2 710 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 KCNH6Q9H252 994 aa4.58□□□□□ -1.68
TCOF1-208ENST00000506063 USP24Q9UPU5 2620 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 GNAT3A8MTJ3 354 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 KCTD2Q14681 263 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 CCDC85BQ15834 202 aaPredicted RBP4.57□□□□□ -1.68
TCOF1-208ENST00000506063 SUPT20HL1Q3ZLR7 823 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 ERMP1Q7Z2K6 904 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 ANKRD23Q86SG2 305 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 NLRP10Q86W26 655 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 LBHD1Q9BQE6 289 aaPredicted RBP4.57□□□□□ -1.68
TCOF1-208ENST00000506063 PRDM12Q9H4Q4 367 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 A0A1B0GUL6 1792 aa4.57□□□□□ -1.68
TCOF1-208ENST00000506063 SETXQ7Z333 2677 aaKnown RBP4.57□□□□□ -1.68
TCOF1-208ENST00000506063 DLG5Q8TDM6 1919 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 SH3TC1Q8TE82 1336 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 MYO3BQ8WXR4 1341 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 CLRN2A0PK11 232 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 PDHXO00330 501 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 ERC2O15083 957 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 SLC24A1O60721 1099 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 HMGCRP04035 888 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 ITGB8P26012 769 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 MMP14P50281 582 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 MAP3K9P80192 1104 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 RASA3Q14644 834 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 STRIP1Q5VSL9 837 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 LHX8Q68G74 356 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 GPAT2Q6NUI2 795 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 KIF6Q6ZMV9 814 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 TXNRD3Q86VQ6 643 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 KIAA0825Q8IV33 1275 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 OGFOD1Q8N543 542 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 CERS5Q8N5B7 392 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 IL27Q8NEV9 243 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 BADQ92934 168 aa4.56□□□□□ -1.68
TCOF1-208ENST00000506063 PRMT6Q96LA8 375 aaPredicted RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms