RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GTF2A2P52657 109 aa26.39■■□□□ 1.82
SQSTM1-210ENST00000506042 SUCLG2Q96I99 432 aa26.39■■□□□ 1.82
SQSTM1-210ENST00000506042 SUGT1Q9Y2Z0 365 aa26.39■■□□□ 1.82
SQSTM1-210ENST00000506042 UTYO14607 1347 aa26.39■■□□□ 1.81
SQSTM1-210ENST00000506042 PDE4DIPQ5VU43 2346 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 SP3Q02447 781 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 OTOP1Q7RTM1 612 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 ELP3Q9H9T3 547 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 EFCC1Q9HA90 598 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 ZFYVE28Q9HCC9 887 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 HDAC5Q9UQL6 1122 aa26.38■■□□□ 1.81
SQSTM1-210ENST00000506042 TCP10L2B9ZVM9 353 aa26.37■■□□□ 1.81
SQSTM1-210ENST00000506042 IGF2BP3O00425 579 aaKnown RBP eCLIP26.37■■□□□ 1.81
SQSTM1-210ENST00000506042 CHAF1AQ13111 956 aaPredicted RBP26.37■■□□□ 1.81
SQSTM1-210ENST00000506042 RIPOR2Q9Y4F9 1068 aa26.37■■□□□ 1.81
SQSTM1-210ENST00000506042 PCDHAC2Q9Y5I4 1007 aa26.37■■□□□ 1.81
SQSTM1-210ENST00000506042 TESPA1A2RU30 521 aaPredicted RBP26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 PDE8BO95263 885 aa26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 MAP3K9P80192 1104 aa26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 CRHR2Q13324 411 aa26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 DCAF15Q66K64 600 aa26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 BICC1Q9H694 974 aaKnown RBP26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 KIF16BQ96L93 1317 aa26.36■■□□□ 1.81
SQSTM1-210ENST00000506042 NBPF7P0C2Y1 421 aaPredicted RBP26.35■■□□□ 1.81
SQSTM1-210ENST00000506042 KIF22Q14807 665 aa26.35■■□□□ 1.81
SQSTM1-210ENST00000506042 RABL6Q3YEC7 729 aaPredicted RBP26.35■■□□□ 1.81
SQSTM1-210ENST00000506042 NBPF11Q86T75 865 aa26.35■■□□□ 1.81
SQSTM1-210ENST00000506042 MRIQ9BWK5 157 aa26.35■■□□□ 1.81
SQSTM1-210ENST00000506042 PUM3Q15397 648 aaKnown RBP26.34■■□□□ 1.81
SQSTM1-210ENST00000506042 FBXO33Q7Z6M2 555 aa26.34■■□□□ 1.81
SQSTM1-210ENST00000506042 SPINK5Q9NQ38 1064 aaPredicted RBP26.34■■□□□ 1.81
SQSTM1-210ENST00000506042 PTPN22Q9Y2R2 807 aa26.34■■□□□ 1.81
SQSTM1-210ENST00000506042 E9PSI1 815 aa26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 TAF1CQ15572 869 aaPredicted RBP26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 FKBP1CQ5VVH2 108 aa26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 FAM83AQ86UY5 434 aa26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 TMEM106CQ9BVX2 250 aa26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 PUS3Q9BZE2 481 aaKnown RBP26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 R3HDMLQ9H3Y0 253 aa26.33■■□□□ 1.81
SQSTM1-210ENST00000506042 CCL15-CCL14A0A0B4J2E2 113 aa26.32■■□□□ 1.8
SQSTM1-210ENST00000506042 SLC5A1P13866 664 aa26.32■■□□□ 1.8
SQSTM1-210ENST00000506042 CCL15Q16663 113 aa26.32■■□□□ 1.8
SQSTM1-210ENST00000506042 CD99L2Q8TCZ2 262 aa26.32■■□□□ 1.8
SQSTM1-210ENST00000506042 ZCCHC17Q9NP64 241 aaKnown RBP26.32■■□□□ 1.8
SQSTM1-210ENST00000506042 CETPP11597 493 aa26.31■■□□□ 1.8
SQSTM1-210ENST00000506042 WDR66Q8TBY9 1149 aa26.31■■□□□ 1.8
SQSTM1-210ENST00000506042 ZDHHC15Q96MV8 337 aa26.31■■□□□ 1.8
SQSTM1-210ENST00000506042 TMEM39BQ9GZU3 492 aa26.31■■□□□ 1.8
SQSTM1-210ENST00000506042 IQSEC3Q9UPP2 1182 aaPredicted RBP26.31■■□□□ 1.8
SQSTM1-210ENST00000506042 OTOFQ9HC10 1997 aa26.3■■□□□ 1.8
SQSTM1-210ENST00000506042 VGLL4Q14135 290 aa26.3■■□□□ 1.8
SQSTM1-210ENST00000506042 ERO1BQ86YB8 467 aa26.3■■□□□ 1.8
SQSTM1-210ENST00000506042 OTUD5Q96G74 571 aa26.3■■□□□ 1.8
SQSTM1-210ENST00000506042 GNL3LQ9NVN8 582 aaKnown RBP26.3■■□□□ 1.8
SQSTM1-210ENST00000506042 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.29■■□□□ 1.8
SQSTM1-210ENST00000506042 TEPSINQ96N21 525 aa26.29■■□□□ 1.8
SQSTM1-210ENST00000506042 SNAPC2Q13487 334 aa26.28■■□□□ 1.8
SQSTM1-210ENST00000506042 HHIPL2Q6UWX4 724 aa26.28■■□□□ 1.8
SQSTM1-210ENST00000506042 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.28■■□□□ 1.8
SQSTM1-210ENST00000506042 MRPL50Q8N5N7 158 aaKnown RBP26.28■■□□□ 1.8
SQSTM1-210ENST00000506042 KAZALD1Q96I82 304 aa26.28■■□□□ 1.8
SQSTM1-210ENST00000506042 WRNIP1Q96S55 665 aa26.28■■□□□ 1.8
SQSTM1-210ENST00000506042 TNRC18O15417 2968 aaPredicted RBP26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 SPDYE5A6NIY4 337 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 GNRH1P01148 92 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 GJA5P36382 358 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 SLC9C1Q4G0N8 1177 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 LRRC24Q50LG9 513 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 LPIN2Q92539 896 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 FBXO3Q9UK99 471 aa26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 RPAP1Q9BWH6 1393 aaPredicted RBP26.27■■□□□ 1.8
SQSTM1-210ENST00000506042 MYH13Q9UKX3 1938 aa26.26■■□□□ 1.79
SQSTM1-210ENST00000506042 ALDH1L2Q3SY69 923 aa26.26■■□□□ 1.79
SQSTM1-210ENST00000506042 ARMC5Q96C12 935 aa26.26■■□□□ 1.79
SQSTM1-210ENST00000506042 MS4A4AQ96JQ5 239 aa26.26■■□□□ 1.79
SQSTM1-210ENST00000506042 ZNF341Q9BYN7 854 aa26.26■■□□□ 1.79
SQSTM1-210ENST00000506042 ANKRD44Q8N8A2 993 aa26.25■■□□□ 1.79
SQSTM1-210ENST00000506042 PTPN18Q99952 460 aa26.25■■□□□ 1.79
SQSTM1-210ENST00000506042 RBBP6Q7Z6E9 1792 aaKnown RBP26.25■■□□□ 1.79
SQSTM1-210ENST00000506042 AOX1Q06278 1338 aa26.24■■□□□ 1.79
SQSTM1-210ENST00000506042 EYA2O00167 538 aa26.24■■□□□ 1.79
SQSTM1-210ENST00000506042 BCAMP50895 628 aa26.24■■□□□ 1.79
SQSTM1-210ENST00000506042 PRMT2P55345 433 aa26.24■■□□□ 1.79
SQSTM1-210ENST00000506042 VGLL2Q8N8G2 317 aa26.24■■□□□ 1.79
SQSTM1-210ENST00000506042 BRI3BPQ8WY22 251 aa26.24■■□□□ 1.79
SQSTM1-210ENST00000506042 ZNF521Q96K83 1311 aa26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 UBTFL1P0CB47 393 aaPredicted RBP26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 PPIL2Q13356 520 aa26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 ZGPATQ8N5A5 531 aaKnown RBP26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 USP44Q9H0E7 712 aa26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 SMC4Q9NTJ3 1288 aa26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 CEP126Q9P2H0 1117 aa26.22■■□□□ 1.79
SQSTM1-210ENST00000506042 PPATQ06203 517 aa26.21■■□□□ 1.79
SQSTM1-210ENST00000506042 SLC4A8Q2Y0W8 1093 aa26.21■■□□□ 1.79
SQSTM1-210ENST00000506042 SEMA3EO15041 775 aa26.2■■□□□ 1.78
SQSTM1-210ENST00000506042 TLR2O60603 784 aa26.2■■□□□ 1.78
SQSTM1-210ENST00000506042 CT47B1P0C2W7 299 aaPredicted RBP26.2■■□□□ 1.78
SQSTM1-210ENST00000506042 CACNB3P54284 484 aa26.2■■□□□ 1.78
SQSTM1-210ENST00000506042 SLF2Q8IX21 1173 aa26.2■■□□□ 1.78
SQSTM1-210ENST00000506042 FAM151AQ8WW52 585 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms