RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 ZIC5Q96T25 663 aa17.65■□□□□ 0.42
HOXC9-202ENST00000504557 DEFB129Q9H1M3 183 aa17.65■□□□□ 0.42
HOXC9-202ENST00000504557 GNL3LQ9NVN8 582 aaKnown RBP17.65■□□□□ 0.42
HOXC9-202ENST00000504557 WBP1LQ9NX94 342 aa17.65■□□□□ 0.42
HOXC9-202ENST00000504557 TSKSQ9UJT2 592 aa17.65■□□□□ 0.42
HOXC9-202ENST00000504557 RCAN3Q9UKA8 241 aa17.65■□□□□ 0.42
HOXC9-202ENST00000504557 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.65■□□□□ 0.42
HOXC9-202ENST00000504557 A0A1B0GUL7 405 aa17.64■□□□□ 0.41
HOXC9-202ENST00000504557 SERPINA10Q9UK55 444 aa17.64■□□□□ 0.41
HOXC9-202ENST00000504557 TCP10L2B9ZVM9 353 aa17.63■□□□□ 0.41
HOXC9-202ENST00000504557 ZBTB7BO15156 539 aaPredicted RBP17.63■□□□□ 0.41
HOXC9-202ENST00000504557 LBX1P52954 281 aa17.63■□□□□ 0.41
HOXC9-202ENST00000504557 GORABQ5T7V8 394 aa17.63■□□□□ 0.41
HOXC9-202ENST00000504557 CCDC102BQ68D86 513 aa17.63■□□□□ 0.41
HOXC9-202ENST00000504557 TEKT1Q969V4 418 aa17.63■□□□□ 0.41
HOXC9-202ENST00000504557 ZNF70Q9UC06 446 aaPredicted RBP17.63■□□□□ 0.41
HOXC9-202ENST00000504557 AKAP2Q9Y2D5 859 aa17.63■□□□□ 0.41
HOXC9-202ENST00000504557 SURF6O75683 361 aaKnown RBP17.62■□□□□ 0.41
HOXC9-202ENST00000504557 MAP2K2P36507 400 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 CTCFP49711 727 aaPredicted RBP17.62■□□□□ 0.41
HOXC9-202ENST00000504557 CACNB3P54284 484 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 ATP8B2P98198 1209 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 MKRN3Q13064 507 aaKnown RBP17.62■□□□□ 0.41
HOXC9-202ENST00000504557 NOGQ13253 232 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 WDR66Q8TBY9 1149 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 XAGE2Q96GT9 111 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 ANGEL1Q9UNK9 670 aaKnown RBP17.62■□□□□ 0.41
HOXC9-202ENST00000504557 COG6Q9Y2V7 657 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 CASP8AP2Q9UKL3 1982 aa17.62■□□□□ 0.41
HOXC9-202ENST00000504557 FAM155AB1AL88 458 aaPredicted RBP17.61■□□□□ 0.41
HOXC9-202ENST00000504557 RASA3Q14644 834 aa17.61■□□□□ 0.41
HOXC9-202ENST00000504557 ARMC9Q7Z3E5 817 aa17.61■□□□□ 0.41
HOXC9-202ENST00000504557 CCDC102AQ96A19 550 aa17.61■□□□□ 0.41
HOXC9-202ENST00000504557 BCL11AQ9H165 835 aa17.61■□□□□ 0.41
HOXC9-202ENST00000504557 MS4A1P11836 297 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 PRDX5P30044 214 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 FKBP1BP68106 108 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 KIF23Q02241 960 aaPredicted RBP17.6■□□□□ 0.41
HOXC9-202ENST00000504557 DIXDC1Q155Q3 683 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 SPDYE2Q495Y8 402 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 NBPF12Q5TAG4 269 aaPredicted RBP17.6■□□□□ 0.41
HOXC9-202ENST00000504557 ABCF2Q9UG63 623 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 DENND2AQ9ULE3 1009 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 MAST3O60307 1309 aa17.6■□□□□ 0.41
HOXC9-202ENST00000504557 LDHBP07195 334 aaKnown RBP17.59■□□□□ 0.41
HOXC9-202ENST00000504557 SLC10A3P09131 477 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 HSPA8P11142 646 aaKnown RBP17.59■□□□□ 0.41
HOXC9-202ENST00000504557 RASGRF1Q13972 1273 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 POLA2Q14181 598 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 MVPQ14764 893 aaKnown RBP17.59■□□□□ 0.41
HOXC9-202ENST00000504557 RASAL3Q86YV0 1011 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 TNS4Q8IZW8 715 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 SSH3Q8TE77 659 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 TMOD2Q9NZR1 351 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 OTOFQ9HC10 1997 aa17.59■□□□□ 0.41
HOXC9-202ENST00000504557 SSC5DA1L4H1 1573 aa17.58■□□□□ 0.41
HOXC9-202ENST00000504557 TNFAIP1Q13829 316 aa17.58■□□□□ 0.4
HOXC9-202ENST00000504557 CDAN1Q8IWY9 1227 aa17.58■□□□□ 0.4
HOXC9-202ENST00000504557 TMEM39BQ9GZU3 492 aa17.58■□□□□ 0.4
HOXC9-202ENST00000504557 PPP2R3BQ9Y5P8 575 aa17.58■□□□□ 0.4
HOXC9-202ENST00000504557 MYO5AQ9Y4I1 1855 aaKnown RBP17.58■□□□□ 0.4
HOXC9-202ENST00000504557 SEMA3EO15041 775 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 TNNI2P48788 182 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 HDLBPQ00341 1268 aaKnown RBP17.57■□□□□ 0.4
HOXC9-202ENST00000504557 SUPT20HL1Q3ZLR7 823 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 CEP85Q6P2H3 762 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 PI16Q6UXB8 463 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 ZDHHC15Q96MV8 337 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 SUGT1Q9Y2Z0 365 aa17.57■□□□□ 0.4
HOXC9-202ENST00000504557 APBB1O00213 710 aa17.56■□□□□ 0.4
HOXC9-202ENST00000504557 PPP1R12BO60237 982 aaPredicted RBP17.56■□□□□ 0.4
HOXC9-202ENST00000504557 C20orf194Q5TEA3 1177 aa17.56■□□□□ 0.4
HOXC9-202ENST00000504557 DZIP1Q86YF9 867 aaKnown RBP17.56■□□□□ 0.4
HOXC9-202ENST00000504557 EXOC6BQ9Y2D4 811 aa17.56■□□□□ 0.4
HOXC9-202ENST00000504557 CAPN15O75808 1086 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 TNNI3KQ59H18 835 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 APOBEC3HQ6NTF7 200 aaKnown RBP17.55■□□□□ 0.4
HOXC9-202ENST00000504557 HHIPL2Q6UWX4 724 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 CLMNQ96JQ2 1002 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 DDX19BQ9UMR2 479 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 DAGLAQ9Y4D2 1042 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 FPGT-TNNI3KV9GXZ4 949 aa17.55■□□□□ 0.4
HOXC9-202ENST00000504557 TCP10Q12799 353 aa17.54■□□□□ 0.4
HOXC9-202ENST00000504557 TTC39AQ5SRH9 613 aa17.54■□□□□ 0.4
HOXC9-202ENST00000504557 TBC1D9Q6ZT07 1266 aa17.54■□□□□ 0.4
HOXC9-202ENST00000504557 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.54■□□□□ 0.4
HOXC9-202ENST00000504557 DBNDD2Q9BQY9 259 aa17.54■□□□□ 0.4
HOXC9-202ENST00000504557 SNRKQ9NRH2 765 aa17.54■□□□□ 0.4
HOXC9-202ENST00000504557 HMG20BQ9P0W2 317 aa17.54■□□□□ 0.4
HOXC9-202ENST00000504557 SALL1Q9NSC2 1324 aa17.53■□□□□ 0.4
HOXC9-202ENST00000504557 TRPA1O75762 1119 aa17.53■□□□□ 0.4
HOXC9-202ENST00000504557 IREB2P48200 963 aaKnown RBP17.53■□□□□ 0.4
HOXC9-202ENST00000504557 ZGPATQ8N5A5 531 aaKnown RBP17.53■□□□□ 0.4
HOXC9-202ENST00000504557 SPATA5Q8NB90 893 aa17.53■□□□□ 0.4
HOXC9-202ENST00000504557 SLC10A4Q96EP9 437 aa17.53■□□□□ 0.4
HOXC9-202ENST00000504557 CSRNP1Q96S65 589 aa17.53■□□□□ 0.4
HOXC9-202ENST00000504557 CCDC8Q9H0W5 538 aaPredicted RBP17.53■□□□□ 0.4
HOXC9-202ENST00000504557 PRDM10Q9NQV6 1147 aa17.53■□□□□ 0.4
HOXC9-202ENST00000504557 USP2O75604 605 aaPredicted RBP17.52■□□□□ 0.4
HOXC9-202ENST00000504557 IFFO2Q5TF58 517 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms