RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CALM1P0DP23 149 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 CALM2P0DP24 149 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 CALM3P0DP25 149 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 GIMAP6Q6P9H5 292 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 EDC3Q96F86 508 aaKnown RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 ZNF396Q96N95 335 aaPredicted RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 LRRC4BQ9NT99 713 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 TJP1Q07157 1748 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 POLRMTO00411 1230 aaKnown RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 IFIT3O14879 490 aaKnown RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 HOXA10P31260 410 aaPredicted RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 ATP6V0A2Q9Y487 856 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 SLC12A7Q9Y666 1083 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 PPP2R5BQ15173 497 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 LLPHQ9BRT6 129 aaKnown RBP9.82□□□□□ -0.84
USP54-215ENST00000497106 MED23Q9ULK4 1368 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 ZNF831Q5JPB2 1677 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 MBD3O95983 291 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 TM4SF1P30408 202 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 AK2P54819 239 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 ALX1Q15699 326 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 TMEM67Q5HYA8 995 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 L1TD1Q5T7N2 865 aaKnown RBP9.82□□□□□ -0.84
USP54-215ENST00000497106 LARP1BQ659C4 914 aaKnown RBP9.82□□□□□ -0.84
USP54-215ENST00000497106 CCDC129Q6ZRS4 1044 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 JDP2Q8WYK2 163 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 ATP8A2Q9NTI2 1148 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.82□□□□□ -0.84
USP54-215ENST00000497106 PRC1O43663 620 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 MYO1BO43795 1136 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 PTH1RQ03431 593 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 EZH2Q15910 746 aaKnown RBP9.82□□□□□ -0.84
USP54-215ENST00000497106 CATIPQ7Z7H3 387 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 TTC6Q86TZ1 520 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 CCDC83Q8IWF9 413 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 AKT1S1Q96B36 256 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 ARMT1Q9H993 441 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 ISY1Q9ULR0 285 aaKnown RBP9.82□□□□□ -0.84
USP54-215ENST00000497106 TSGA10IPQ3SY00 556 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 FBXO33Q7Z6M2 555 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 OGFOD1Q8N543 542 aa9.82□□□□□ -0.84
USP54-215ENST00000497106 NECTIN1Q15223 517 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 Q6ZUG5 572 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 C15orf52Q6ZUT6 534 aaKnown RBP9.81□□□□□ -0.84
USP54-215ENST00000497106 TTLL6Q8N841 843 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 PIH1D3Q9NQM4 214 aaKnown RBP9.81□□□□□ -0.84
USP54-215ENST00000497106 PNPLA7Q6ZV29 1317 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 WDR19Q8NEZ3 1342 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 RIMBP2O15034 1052 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 CYP2E1P05181 493 aaPredicted RBP9.81□□□□□ -0.84
USP54-215ENST00000497106 KIF5BP33176 963 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 MIGA1Q8NAN2 632 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 RBM27Q9P2N5 1060 aaKnown RBP9.81□□□□□ -0.84
USP54-215ENST00000497106 BTAF1O14981 1849 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 GOLGA8BA8MQT2 603 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 HAND2P61296 217 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 WTAPQ15007 396 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 NFKBIBQ15653 356 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 POTEAQ6S8J7 498 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 PTF1AQ7RTS3 328 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 VGLL2Q8N8G2 317 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 FAM84BQ96KN1 310 aaPredicted RBP9.81□□□□□ -0.84
USP54-215ENST00000497106 MTA3Q9BTC8 594 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 ALDH8A1Q9H2A2 487 aaPredicted RBP9.81□□□□□ -0.84
USP54-215ENST00000497106 NDUFB9Q9Y6M9 179 aa9.81□□□□□ -0.84
USP54-215ENST00000497106 GOLGA8AA7E2F4 631 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 ZMYM6O95789 1325 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 MFSD14BQ5SR56 506 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 NUP188Q5SRE5 1749 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 IFNL3Q8IZI9 196 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 CTCFLQ8NI51 663 aaPredicted RBP9.8□□□□□ -0.84
USP54-215ENST00000497106 ANTXR1Q9H6X2 564 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 MYO3BQ8WXR4 1341 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 M0R2C6 588 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 GNAQP50148 359 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 MCTP1Q6DN14 999 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 PODNQ7Z5L7 613 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 TEX11Q8IYF3 940 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 BRF1Q92994 677 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 ZNF219Q9P2Y4 722 aaPredicted RBP9.8□□□□□ -0.84
USP54-215ENST00000497106 C4BP0C0L5 1744 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 RANBP6O60518 1105 aaKnown RBP9.8□□□□□ -0.84
USP54-215ENST00000497106 GPSM2P81274 684 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 SF3A1Q15459 793 aaKnown RBP9.8□□□□□ -0.84
USP54-215ENST00000497106 NIM1KQ8IY84 436 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 CRACR2BQ8N4Y2 399 aaPredicted RBP9.8□□□□□ -0.84
USP54-215ENST00000497106 E7EWF7 191 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 STK3Q13188 491 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 OSBP2Q969R2 916 aa9.8□□□□□ -0.84
USP54-215ENST00000497106 PPIP5K2O43314 1243 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 METAP2P50579 478 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP54-215ENST00000497106 AKNAD1Q5T1N1 836 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 ZNF589Q86UQ0 364 aaPredicted RBP9.79□□□□□ -0.84
USP54-215ENST00000497106 TEKT1Q969V4 418 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 WWC3Q9ULE0 1092 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 TSPY2A6NKD2 308 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 KRT85P78386 507 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 LARGE2Q8N3Y3 721 aa9.79□□□□□ -0.84
USP54-215ENST00000497106 RBM28Q9NW13 759 aaKnown RBP9.79□□□□□ -0.84
USP54-215ENST00000497106 MCM9Q9NXL9 1143 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms