RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 KDM5AP29375 1690 aaKnown RBP7.28□□□□□ -1.24
CSMD3-208ENST00000497026 RPRD2Q5VT52 1461 aaKnown RBP7.28□□□□□ -1.24
CSMD3-208ENST00000497026 KRTAP4-8A0A0G2JLE6 195 aa7.27□□□□□ -1.24
CSMD3-208ENST00000497026 SCO2A0A1W2PP80 73 aa7.27□□□□□ -1.24
CSMD3-208ENST00000497026 PSAPP07602 524 aa7.27□□□□□ -1.24
CSMD3-208ENST00000497026 PCSK7Q16549 785 aa7.27□□□□□ -1.24
CSMD3-208ENST00000497026 ATCAYQ86WG3 371 aa7.27□□□□□ -1.24
CSMD3-208ENST00000497026 STIM2Q9P246 746 aa7.27□□□□□ -1.24
CSMD3-208ENST00000497026 HFM1A2PYH4 1435 aa7.27□□□□□ -1.25
CSMD3-208ENST00000497026 LTBP4Q8N2S1 1624 aa7.27□□□□□ -1.25
CSMD3-208ENST00000497026 NRLP54845 237 aa7.27□□□□□ -1.25
CSMD3-208ENST00000497026 RAC1P63000 192 aa7.27□□□□□ -1.25
CSMD3-208ENST00000497026 GRIK5Q16478 980 aa7.27□□□□□ -1.25
CSMD3-208ENST00000497026 PIK3R5Q8WYR1 880 aa7.27□□□□□ -1.25
CSMD3-208ENST00000497026 MYO5BQ9ULV0 1848 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 ARHGAP23Q9P227 1491 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 LOC102724428A0A0B4J2F2 783 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 SELPP16109 830 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 SIK1P57059 783 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 MSL1Q68DK7 614 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 NLRP13Q86W25 1043 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 PLD4Q96BZ4 506 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 C11orf16Q9NQ32 467 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 SLIT1O75093 1534 aa7.26□□□□□ -1.25
CSMD3-208ENST00000497026 ADGRB3O60242 1522 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 SPHKAPQ2M3C7 1700 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 TMEM88BA6NKF7 163 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 ITGB7P26010 798 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 ARID4AP29374 1257 aaPredicted RBP7.25□□□□□ -1.25
CSMD3-208ENST00000497026 ZEB1P37275 1124 aaPredicted RBP7.25□□□□□ -1.25
CSMD3-208ENST00000497026 COL13A1Q5TAT6 717 aaPredicted RBP7.25□□□□□ -1.25
CSMD3-208ENST00000497026 GDF6Q6KF10 455 aaPredicted RBP7.25□□□□□ -1.25
CSMD3-208ENST00000497026 WFDC8Q8IUA0 241 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 FMR1NBQ8N0W7 255 aaPredicted RBP7.25□□□□□ -1.25
CSMD3-208ENST00000497026 GOLGA2P5Q9HBQ8 144 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 MED14O60244 1454 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 IQGAP1P46940 1657 aa7.25□□□□□ -1.25
CSMD3-208ENST00000497026 NUP155O75694 1391 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 ELNP15502 786 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 MTMR3Q13615 1198 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 NACC1Q96RE7 527 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 ZFP64Q9NPA5 681 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 TPSG1Q9NRR2 321 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 FRRS1LQ9P0K9 344 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 TMEM131LA2VDJ0 1609 aa7.24□□□□□ -1.25
CSMD3-208ENST00000497026 GHRHP01286 108 aa7.23□□□□□ -1.25
CSMD3-208ENST00000497026 CYP2E1P05181 493 aaPredicted RBP7.23□□□□□ -1.25
CSMD3-208ENST00000497026 IDI1Q13907 227 aa7.23□□□□□ -1.25
CSMD3-208ENST00000497026 NBPF11Q86T75 865 aa7.23□□□□□ -1.25
CSMD3-208ENST00000497026 THEMISQ8N1K5 641 aaPredicted RBP7.23□□□□□ -1.25
CSMD3-208ENST00000497026 ABTB2Q8N961 1025 aa7.23□□□□□ -1.25
CSMD3-208ENST00000497026 GTF3C2Q8WUA4 911 aaPredicted RBP7.23□□□□□ -1.25
CSMD3-208ENST00000497026 NUDT16Q96DE0 195 aaKnown RBP7.23□□□□□ -1.25
CSMD3-208ENST00000497026 FAM13BQ9NYF5 915 aa7.23□□□□□ -1.25
CSMD3-208ENST00000497026 USP21Q9UK80 565 aa7.23□□□□□ -1.25
CSMD3-208ENST00000497026 STRCP1A6NGW2 1772 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 SCAF11Q99590 1463 aaKnown RBP7.22□□□□□ -1.25
CSMD3-208ENST00000497026 NPHP4O75161 1426 aaPredicted RBP7.22□□□□□ -1.25
CSMD3-208ENST00000497026 MBTPS1Q14703 1052 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 ILDR2Q71H61 639 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 ARID3AQ99856 593 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 PCGF6Q9BYE7 350 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 TRIM33Q9UPN9 1127 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 TMEM2Q9UHN6 1383 aa7.22□□□□□ -1.25
CSMD3-208ENST00000497026 ZNF335Q9H4Z2 1342 aaPredicted RBP7.21□□□□□ -1.25
CSMD3-208ENST00000497026 A6NHS1 94 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 C9orf172C9J069 976 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 PPP1R15AO75807 674 aaPredicted RBP7.21□□□□□ -1.25
CSMD3-208ENST00000497026 SSFA2P28290 1259 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 ATP11AP98196 1134 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 DNM1Q05193 864 aaKnown RBP7.21□□□□□ -1.25
CSMD3-208ENST00000497026 ARTNQ5T4W7 220 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 TTC39BQ5VTQ0 682 aaPredicted RBP7.21□□□□□ -1.25
CSMD3-208ENST00000497026 IL22RA1Q8N6P7 574 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 OR13H1Q8NG92 308 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 HELQQ8TDG4 1101 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 EDEM1Q92611 657 aa7.21□□□□□ -1.25
CSMD3-208ENST00000497026 FNDC3AQ9Y2H6 1198 aaKnown RBP7.21□□□□□ -1.25
CSMD3-208ENST00000497026 TRPM2O94759 1503 aa7.21□□□□□ -1.26
CSMD3-208ENST00000497026 CLTCL1P53675 1640 aa7.21□□□□□ -1.26
CSMD3-208ENST00000497026 ZFYVE9O95405 1425 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 DEAF1O75398 565 aaPredicted RBP7.2□□□□□ -1.26
CSMD3-208ENST00000497026 MPSTP25325 297 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 LTKP29376 864 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 ADGRE1Q14246 886 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 RSPO4Q2I0M5 234 aaPredicted RBP7.2□□□□□ -1.26
CSMD3-208ENST00000497026 FBXO11Q86XK2 927 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 ANKLE2Q86XL3 938 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 TTC9Q92623 222 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 TMEM63CQ9P1W3 806 aa7.2□□□□□ -1.26
CSMD3-208ENST00000497026 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.2□□□□□ -1.26
CSMD3-208ENST00000497026 CDC25BP30305 580 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 SOX18P35713 384 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 LENG1Q96BZ8 264 aaPredicted RBP7.19□□□□□ -1.26
CSMD3-208ENST00000497026 LACRTQ9GZZ8 138 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 RBSNQ9H1K0 784 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 ELP3Q9H9T3 547 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 ANO2Q9NQ90 1003 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 SLC52A1Q9NWF4 448 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 KANSL3Q9P2N6 904 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms