RNA–Protein interactions for RNA: ENST00000496363.5

USF1-207, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 990 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-207ENST00000496363 NOM1Q5C9Z4 860 aaKnown RBP16.38■□□□□ 0.21
USF1-207ENST00000496363 VPS37DQ86XT2 251 aa16.38■□□□□ 0.21
USF1-207ENST00000496363 IFNL1Q8IU54 200 aa16.38■□□□□ 0.21
USF1-207ENST00000496363 USP44Q9H0E7 712 aa16.38■□□□□ 0.21
USF1-207ENST00000496363 TCP10L2B9ZVM9 353 aa16.37■□□□□ 0.21
USF1-207ENST00000496363 IREB2P48200 963 aaKnown RBP16.37■□□□□ 0.21
USF1-207ENST00000496363 SLFN5Q08AF3 891 aa16.37■□□□□ 0.21
USF1-207ENST00000496363 PKN2Q16513 984 aaKnown RBP16.37■□□□□ 0.21
USF1-207ENST00000496363 CDCA7LQ96GN5 454 aa16.37■□□□□ 0.21
USF1-207ENST00000496363 TEPSINQ96N21 525 aa16.37■□□□□ 0.21
USF1-207ENST00000496363 PDE8BO95263 885 aa16.36■□□□□ 0.21
USF1-207ENST00000496363 BCAMP50895 628 aa16.36■□□□□ 0.21
USF1-207ENST00000496363 TNFAIP1Q13829 316 aa16.36■□□□□ 0.21
USF1-207ENST00000496363 TMEM39BQ9GZU3 492 aa16.36■□□□□ 0.21
USF1-207ENST00000496363 ELP3Q9H9T3 547 aa16.36■□□□□ 0.21
USF1-207ENST00000496363 FRAT2O75474 233 aaPredicted RBP16.35■□□□□ 0.21
USF1-207ENST00000496363 ALDH1A1P00352 501 aa16.35■□□□□ 0.21
USF1-207ENST00000496363 CACNB3P54284 484 aa16.35■□□□□ 0.21
USF1-207ENST00000496363 CAVIN4Q5BKX8 364 aa16.35■□□□□ 0.21
USF1-207ENST00000496363 FBXO46Q6PJ61 603 aaPredicted RBP16.35■□□□□ 0.21
USF1-207ENST00000496363 ANKRD13AQ8IZ07 590 aa16.35■□□□□ 0.21
USF1-207ENST00000496363 CNKSR2Q8WXI2 1034 aa16.35■□□□□ 0.21
USF1-207ENST00000496363 UNCXA6NJT0 531 aa16.34■□□□□ 0.21
USF1-207ENST00000496363 RFX5P48382 616 aaPredicted RBP16.34■□□□□ 0.21
USF1-207ENST00000496363 INHBEP58166 350 aa16.34■□□□□ 0.21
USF1-207ENST00000496363 SMC4Q9NTJ3 1288 aa16.34■□□□□ 0.21
USF1-207ENST00000496363 FGFR2P21802 821 aa16.33■□□□□ 0.2
USF1-207ENST00000496363 CRHR2Q13324 411 aa16.33■□□□□ 0.2
USF1-207ENST00000496363 PUM3Q15397 648 aaKnown RBP16.33■□□□□ 0.2
USF1-207ENST00000496363 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.33■□□□□ 0.2
USF1-207ENST00000496363 TBC1D22AQ8WUA7 517 aa16.33■□□□□ 0.2
USF1-207ENST00000496363 OPTNQ96CV9 577 aa16.33■□□□□ 0.2
USF1-207ENST00000496363 PTPN18Q99952 460 aa16.33■□□□□ 0.2
USF1-207ENST00000496363 MKI67P46013 3256 aaKnown RBP16.33■□□□□ 0.2
USF1-207ENST00000496363 EYA2O00167 538 aa16.32■□□□□ 0.2
USF1-207ENST00000496363 TNNI2P48788 182 aa16.32■□□□□ 0.2
USF1-207ENST00000496363 VGLL4Q14135 290 aa16.32■□□□□ 0.2
USF1-207ENST00000496363 ALDH1L2Q3SY69 923 aa16.32■□□□□ 0.2
USF1-207ENST00000496363 TEKT1Q969V4 418 aa16.32■□□□□ 0.2
USF1-207ENST00000496363 TRIM17Q9Y577 477 aa16.32■□□□□ 0.2
USF1-207ENST00000496363 BRCA2P51587 3418 aa16.31■□□□□ 0.2
USF1-207ENST00000496363 IFIT1P09914 478 aaKnown RBP16.31■□□□□ 0.2
USF1-207ENST00000496363 HDLBPQ00341 1268 aaKnown RBP16.31■□□□□ 0.2
USF1-207ENST00000496363 OTOP1Q7RTM1 612 aa16.31■□□□□ 0.2
USF1-207ENST00000496363 KIAA0100Q14667 2235 aaKnown RBP16.3■□□□□ 0.2
USF1-207ENST00000496363 KIF16BQ96L93 1317 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 AK9Q5TCS8 1911 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 TESPA1A2RU30 521 aaPredicted RBP16.3■□□□□ 0.2
USF1-207ENST00000496363 SLC34A2O95436 690 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 MAP3K9P80192 1104 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 CAP1Q01518 475 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 APOBEC3HQ6NTF7 200 aaKnown RBP16.3■□□□□ 0.2
USF1-207ENST00000496363 ATG9AQ7Z3C6 839 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 TRMT2AQ8IZ69 625 aaKnown RBP16.3■□□□□ 0.2
USF1-207ENST00000496363 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.3■□□□□ 0.2
USF1-207ENST00000496363 CD99L2Q8TCZ2 262 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 BRI3BPQ8WY22 251 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 MS4A4AQ96JQ5 239 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 ZDHHC15Q96MV8 337 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 SIL1Q9H173 461 aa16.3■□□□□ 0.2
USF1-207ENST00000496363 SLC5A1P13866 664 aa16.29■□□□□ 0.2
USF1-207ENST00000496363 OTUD7BQ6GQQ9 843 aa16.29■□□□□ 0.2
USF1-207ENST00000496363 OTUD5Q96G74 571 aa16.29■□□□□ 0.2
USF1-207ENST00000496363 NOB1Q9ULX3 412 aaKnown RBP16.29■□□□□ 0.2
USF1-207ENST00000496363 CCL15-CCL14A0A0B4J2E2 113 aa16.28■□□□□ 0.2
USF1-207ENST00000496363 UBTFL1P0CB47 393 aaPredicted RBP16.28■□□□□ 0.2
USF1-207ENST00000496363 CCL15Q16663 113 aa16.28■□□□□ 0.2
USF1-207ENST00000496363 LPIN2Q92539 896 aa16.28■□□□□ 0.2
USF1-207ENST00000496363 TMOD2Q9NZR1 351 aa16.28■□□□□ 0.2
USF1-207ENST00000496363 CSADQ9Y600 493 aa16.28■□□□□ 0.2
USF1-207ENST00000496363 ZSWIM8A7E2V4 1837 aa16.28■□□□□ 0.2
USF1-207ENST00000496363 MAST3O60307 1309 aa16.27■□□□□ 0.2
USF1-207ENST00000496363 FAM83AQ86UY5 434 aa16.27■□□□□ 0.2
USF1-207ENST00000496363 ERO1AQ96HE7 468 aa16.27■□□□□ 0.2
USF1-207ENST00000496363 MRIQ9BWK5 157 aa16.27■□□□□ 0.2
USF1-207ENST00000496363 PA2G4Q9UQ80 394 aaKnown RBP16.27■□□□□ 0.2
USF1-207ENST00000496363 SUGT1Q9Y2Z0 365 aa16.27■□□□□ 0.2
USF1-207ENST00000496363 LRRFIP2Q9Y608 721 aaKnown RBP16.27■□□□□ 0.2
USF1-207ENST00000496363 SNCAIPQ9Y6H5 919 aa16.27■□□□□ 0.2
USF1-207ENST00000496363 SPDYE5A6NIY4 337 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 GTF2A2P52657 109 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 SP3Q02447 781 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 DIXDC1Q155Q3 683 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 ATP2B3Q16720 1220 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 HHIPL2Q6UWX4 724 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 FAM43AQ8N2R8 423 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 WDR66Q8TBY9 1149 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 ZKSCAN4Q969J2 545 aaPredicted RBP16.26■□□□□ 0.19
USF1-207ENST00000496363 WRNIP1Q96S55 665 aa16.26■□□□□ 0.19
USF1-207ENST00000496363 RBBP6Q7Z6E9 1792 aaKnown RBP16.26■□□□□ 0.19
USF1-207ENST00000496363 MYH2Q9UKX2 1941 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 PRDX5P30044 214 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 TAF1CQ15572 869 aaPredicted RBP16.25■□□□□ 0.19
USF1-207ENST00000496363 FKBP1CQ5VVH2 108 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 MIGA2Q7L4E1 593 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 EFCC1Q9HA90 598 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 PTPN22Q9Y2R2 807 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 DAGLAQ9Y4D2 1042 aa16.25■□□□□ 0.19
USF1-207ENST00000496363 RPAP1Q9BWH6 1393 aaPredicted RBP16.25■□□□□ 0.19
USF1-207ENST00000496363 CIAO1O76071 339 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms