RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ERFEQ4G0M1 354 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PTF1AQ7RTS3 328 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TTLL11Q8NHH1 800 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ITSN1Q15811 1721 aa12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ZNF397Q8NF99 534 aaPredicted RBP12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 AATFQ9NY61 560 aaKnown RBP eCLIP12.42□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 KIF13AQ9H1H9 1805 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 FGAP02671 866 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 DHX8Q14562 1220 aaKnown RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 NAA16Q6N069 864 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 DHX32Q7L7V1 743 aaKnown RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 UIMC1Q96RL1 719 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 M0R2C6 588 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MPHOSPH10O00566 681 aaKnown RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 FAM196AQ6ZSG2 479 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TRIM22Q8IYM9 498 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SAP30BPQ9UHR5 308 aaKnown RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SSH2Q76I76 1423 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 H7C1W4 665 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 COL9A3Q14050 684 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TRAPPC3LQ5T215 181 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MARCH10Q8NA82 808 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 C3P01024 1663 aa12.41□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SMTNL1A8MU46 457 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 E7EWF7 191 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PCCAP05165 728 aaPredicted RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MAP3K11Q16584 847 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SPECC1Q5M775 1068 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TRMT1LQ7Z2T5 733 aaKnown RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 SMARCC1Q92922 1105 aaPredicted RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 KIF20BQ96Q89 1820 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 USP32Q8NFA0 1604 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ARHGAP23Q9P227 1491 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 RGS12O14924 1447 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CYP2D7A0A087X1C5 515 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TSPY2A6NKD2 308 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CALRP27797 417 aaKnown RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 PUM3Q15397 648 aaKnown RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 TXLNBQ8N3L3 684 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 HAUS7Q99871 368 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 RGPD8O14715 1765 aaPredicted RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 ADD1P35611 737 aaKnown RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 LMAN1P49257 510 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 FAM177A1Q8N128 213 aaPredicted RBP12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 HMG20BQ9P0W2 317 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 CLIP2Q9UDT6 1046 aa12.4□□□□□ -0.42
MSH5-SAPCD1-207ENST00000493662 MST1RQ04912 1400 aa12.4□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 WTIPA6NIX2 430 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CLSTN1O94985 981 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CYP19A1P11511 503 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 EIF6P56537 245 aaKnown RBP12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 FOXO4P98177 505 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CHRNDQ07001 517 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 FSIP1Q8NA03 581 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SPATA5Q8NB90 893 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 GTF3C6Q969F1 213 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 PDE8BO95263 885 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 IARSP41252 1262 aaKnown RBP12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MAP4K1Q92918 833 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 RSPH14Q9UHP6 348 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SMC2O95347 1197 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 PTGS1P23219 599 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 RDXP35241 583 aaKnown RBP12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 GPT2Q8TD30 523 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ACBD3Q9H3P7 528 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MCM9Q9NXL9 1143 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MAST3O60307 1309 aa12.39□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CNBD1Q8NA66 436 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 KDM6AO15550 1401 aaPredicted RBP12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MCAMP43121 646 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 TTF1Q15361 905 aaPredicted RBP12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 APPBP2Q92624 585 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ALG1Q9BT22 464 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 KIF2AO00139 706 aaPredicted RBP12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZBTB43O43298 467 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 UQCRFS1P1P0C7P4 283 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SLIT1O75093 1534 aa12.38□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 PDE6AP16499 860 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 FAM47AQ5JRC9 791 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 KLHL10Q6JEL2 608 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CTR9Q6PD62 1173 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ZNF396Q96N95 335 aaPredicted RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 QTRT2Q9H974 415 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ITPK1Q13572 414 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ATG9AQ7Z3C6 839 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 LPIN2Q92539 896 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 AIFM3Q96NN9 605 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CFAP45Q9UL16 551 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 PALLDQ8WX93 1383 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 MAGEB6P1A0A0J9YX57 407 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVL5 298 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 HMGB1P09429 215 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 NOC3LQ8WTT2 800 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 PIH1D3Q9NQM4 214 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 DENND2AQ9ULE3 1009 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 SOS2Q07890 1332 aaPredicted RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 WTAPQ15007 396 aa12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 CCAR1Q8IX12 1150 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 ADGRB2O60241 1585 aa12.36□□□□□ -0.43
MSH5-SAPCD1-207ENST00000493662 NRXN3Q9Y4C0 1643 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms