RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 IRS2Q9Y4H2 1338 aa13.4□□□□□ -0.26
COL6A3-214ENST00000493608 CT47B1P0C2W7 299 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-214ENST00000493608 HNRNPUQ00839 825 aaKnown RBP eCLIP13.4□□□□□ -0.26
COL6A3-214ENST00000493608 LRRC24Q50LG9 513 aa13.4□□□□□ -0.26
COL6A3-214ENST00000493608 STRIP1Q5VSL9 837 aa13.4□□□□□ -0.26
COL6A3-214ENST00000493608 GGA3Q9NZ52 723 aa13.4□□□□□ -0.26
COL6A3-214ENST00000493608 JAG2Q9Y219 1238 aa13.4□□□□□ -0.26
COL6A3-214ENST00000493608 TLL2Q9Y6L7 1015 aa13.4□□□□□ -0.26
COL6A3-214ENST00000493608 NUDT7P0C024 238 aa13.39□□□□□ -0.27
COL6A3-214ENST00000493608 RABL6Q3YEC7 729 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-214ENST00000493608 COL13A1Q5TAT6 717 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-214ENST00000493608 ANGEL2Q5VTE6 544 aaKnown RBP13.39□□□□□ -0.27
COL6A3-214ENST00000493608 KIAA0825Q8IV33 1275 aa13.39□□□□□ -0.27
COL6A3-214ENST00000493608 RIPOR2Q9Y4F9 1068 aa13.39□□□□□ -0.27
COL6A3-214ENST00000493608 DSG2Q14126 1118 aa13.38□□□□□ -0.27
COL6A3-214ENST00000493608 NBPF9Q3BBW0 867 aa13.38□□□□□ -0.27
COL6A3-214ENST00000493608 C15orf52Q6ZUT6 534 aaKnown RBP13.38□□□□□ -0.27
COL6A3-214ENST00000493608 SAPCD2Q86UD0 394 aa13.38□□□□□ -0.27
COL6A3-214ENST00000493608 CAPNS2Q96L46 248 aa13.38□□□□□ -0.27
COL6A3-214ENST00000493608 F8W031 263 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-214ENST00000493608 FOXN1O15353 648 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 AOC2O75106 756 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 BCAR3O75815 825 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 GYG1P46976 350 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 PRAMEF18Q5VWM3 479 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 ZNF804AQ7Z570 1209 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 SULF1Q8IWU6 871 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 PLPP6Q8IY26 295 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 OGFOD1Q8N543 542 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 CERS5Q8N5B7 392 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 API5Q9BZZ5 524 aaKnown RBP13.37□□□□□ -0.27
COL6A3-214ENST00000493608 TNNQ9UQP3 1299 aa13.37□□□□□ -0.27
COL6A3-214ENST00000493608 SASH1O94885 1247 aa13.36□□□□□ -0.27
COL6A3-214ENST00000493608 UBTFL1P0CB47 393 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-214ENST00000493608 IL1R1P14778 569 aa13.36□□□□□ -0.27
COL6A3-214ENST00000493608 BRPF1P55201 1214 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-214ENST00000493608 UBE4AQ14139 1066 aa13.36□□□□□ -0.27
COL6A3-214ENST00000493608 METTL24Q5JXM2 366 aa13.36□□□□□ -0.27
COL6A3-214ENST00000493608 PTCD2Q8WV60 388 aaKnown RBP13.36□□□□□ -0.27
COL6A3-214ENST00000493608 FRAT1Q92837 279 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-214ENST00000493608 ZNF609O15014 1411 aa13.36□□□□□ -0.27
COL6A3-214ENST00000493608 MYO3BQ8WXR4 1341 aa13.36□□□□□ -0.27
COL6A3-214ENST00000493608 WNT10BO00744 389 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 ECE1P42892 770 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 HUNKP57058 714 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 CDCA5Q96FF9 252 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 FAM84BQ96KN1 310 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-214ENST00000493608 CRISPLD2Q9H0B8 497 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 GBA2Q9HCG7 927 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-214ENST00000493608 WBP1LQ9NX94 342 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 IQSEC3Q9UPP2 1182 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-214ENST00000493608 PCDHAC2Q9Y5I4 1007 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 LRRFIP2Q9Y608 721 aaKnown RBP13.35□□□□□ -0.27
COL6A3-214ENST00000493608 MROH5Q6ZUA9 1318 aa13.35□□□□□ -0.27
COL6A3-214ENST00000493608 HIBADHP31937 336 aaKnown RBP13.34□□□□□ -0.27
COL6A3-214ENST00000493608 RFX5P48382 616 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-214ENST00000493608 C2orf69Q8N8R5 385 aa13.34□□□□□ -0.27
COL6A3-214ENST00000493608 CLUAP1Q96AJ1 413 aa13.34□□□□□ -0.27
COL6A3-214ENST00000493608 AIDAQ96BJ3 306 aa13.34□□□□□ -0.27
COL6A3-214ENST00000493608 MEIS3Q99687 375 aa13.34□□□□□ -0.27
COL6A3-214ENST00000493608 HDAC9Q9UKV0 1011 aa13.34□□□□□ -0.27
COL6A3-214ENST00000493608 PDE8BO95263 885 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 PTPN12Q05209 780 aaKnown RBP13.33□□□□□ -0.28
COL6A3-214ENST00000493608 IFFO2Q5TF58 517 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 MOB2Q70IA6 237 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 VGLL2Q8N8G2 317 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 TDRD7Q8NHU6 1098 aaKnown RBP13.33□□□□□ -0.28
COL6A3-214ENST00000493608 ARHGAP45Q92619 1136 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 ZIC5Q96T25 663 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 SIL1Q9H173 461 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 LHX6Q9UPM6 363 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 KIF16BQ96L93 1317 aa13.33□□□□□ -0.28
COL6A3-214ENST00000493608 TRIM27P14373 513 aa13.32□□□□□ -0.28
COL6A3-214ENST00000493608 BCAMP50895 628 aa13.32□□□□□ -0.28
COL6A3-214ENST00000493608 MAP2K1Q02750 393 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-214ENST00000493608 INTS3Q68E01 1043 aaKnown RBP13.32□□□□□ -0.28
COL6A3-214ENST00000493608 FBXO33Q7Z6M2 555 aa13.32□□□□□ -0.28
COL6A3-214ENST00000493608 VPS37DQ86XT2 251 aa13.32□□□□□ -0.28
COL6A3-214ENST00000493608 PA2G4Q9UQ80 394 aaKnown RBP13.32□□□□□ -0.28
COL6A3-214ENST00000493608 EYA2O00167 538 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 IPO8O15397 1037 aaKnown RBP13.31□□□□□ -0.28
COL6A3-214ENST00000493608 CTCFP49711 727 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-214ENST00000493608 RBM5P52756 815 aaKnown RBP eCLIP13.31□□□□□ -0.28
COL6A3-214ENST00000493608 LBX1P52954 281 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 CHAF1AQ13111 956 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-214ENST00000493608 DLGAP5Q15398 846 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 CFAP100Q494V2 611 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 MFSD14BQ5SR56 506 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 RGMBQ6NW40 437 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 ATG9AQ7Z3C6 839 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 HHIPL1Q96JK4 782 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 TSKSQ9UJT2 592 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 FAM205AQ6ZU69 1335 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 PITPNM2Q9BZ72 1349 aa13.31□□□□□ -0.28
COL6A3-214ENST00000493608 CLRN2A0PK11 232 aa13.3□□□□□ -0.28
COL6A3-214ENST00000493608 FRAT2O75474 233 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-214ENST00000493608 MAP2K2P36507 400 aa13.3□□□□□ -0.28
COL6A3-214ENST00000493608 ZNF157P51786 506 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-214ENST00000493608 PRKG1Q13976 671 aa13.3□□□□□ -0.28
COL6A3-214ENST00000493608 GRIK5Q16478 980 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms