RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 KLHDC4Q8TBB5 520 aa20.82■□□□□ 0.92
PTPRU-208ENST00000493601 WNK4Q96J92 1243 aa20.82■□□□□ 0.92
PTPRU-208ENST00000493601 CLMNQ96JQ2 1002 aa20.82■□□□□ 0.92
PTPRU-208ENST00000493601 IQSEC3Q9UPP2 1182 aaPredicted RBP20.82■□□□□ 0.92
PTPRU-208ENST00000493601 GPR25O00155 361 aa20.81■□□□□ 0.92
PTPRU-208ENST00000493601 IFIT1P09914 478 aaKnown RBP20.81■□□□□ 0.92
PTPRU-208ENST00000493601 TDRD3Q9H7E2 651 aaKnown RBP20.81■□□□□ 0.92
PTPRU-208ENST00000493601 TNRC18O15417 2968 aaPredicted RBP20.8■□□□□ 0.92
PTPRU-208ENST00000493601 TNNI2P48788 182 aa20.8■□□□□ 0.92
PTPRU-208ENST00000493601 HDLBPQ00341 1268 aaKnown RBP20.8■□□□□ 0.92
PTPRU-208ENST00000493601 ANKRD13AQ8IZ07 590 aa20.8■□□□□ 0.92
PTPRU-208ENST00000493601 TRMT2AQ8IZ69 625 aaKnown RBP20.8■□□□□ 0.92
PTPRU-208ENST00000493601 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.8■□□□□ 0.92
PTPRU-208ENST00000493601 MAST3O60307 1309 aa20.79■□□□□ 0.92
PTPRU-208ENST00000493601 UBTFL1P0CB47 393 aaPredicted RBP20.79■□□□□ 0.92
PTPRU-208ENST00000493601 IFNL1Q8IU54 200 aa20.79■□□□□ 0.92
PTPRU-208ENST00000493601 TEKT1Q969V4 418 aa20.79■□□□□ 0.92
PTPRU-208ENST00000493601 TCP10L2B9ZVM9 353 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 EYA2O00167 538 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 FKTNO75072 461 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 USP2O75604 605 aaPredicted RBP20.78■□□□□ 0.92
PTPRU-208ENST00000493601 SLC5A1P13866 664 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 FGFR2P21802 821 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 BCAMP50895 628 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 SUGT1Q9Y2Z0 365 aa20.78■□□□□ 0.92
PTPRU-208ENST00000493601 RFX5P48382 616 aaPredicted RBP20.77■□□□□ 0.92
PTPRU-208ENST00000493601 GRIK5Q16478 980 aa20.77■□□□□ 0.92
PTPRU-208ENST00000493601 LPIN2Q92539 896 aa20.77■□□□□ 0.92
PTPRU-208ENST00000493601 TEPSINQ96N21 525 aa20.77■□□□□ 0.92
PTPRU-208ENST00000493601 HPS5Q9UPZ3 1129 aa20.77■□□□□ 0.92
PTPRU-208ENST00000493601 CCER2I3L3R5 266 aa20.76■□□□□ 0.91
PTPRU-208ENST00000493601 ZDHHC15Q96MV8 337 aa20.76■□□□□ 0.91
PTPRU-208ENST00000493601 API5Q9BZZ5 524 aaKnown RBP20.76■□□□□ 0.91
PTPRU-208ENST00000493601 TMEM39BQ9GZU3 492 aa20.76■□□□□ 0.91
PTPRU-208ENST00000493601 TMOD2Q9NZR1 351 aa20.76■□□□□ 0.91
PTPRU-208ENST00000493601 FBXO3Q9UK99 471 aa20.76■□□□□ 0.91
PTPRU-208ENST00000493601 HDAC5Q9UQL6 1122 aa20.76■□□□□ 0.91
PTPRU-208ENST00000493601 SOX10P56693 466 aa20.75■□□□□ 0.91
PTPRU-208ENST00000493601 OTUD7BQ6GQQ9 843 aa20.75■□□□□ 0.91
PTPRU-208ENST00000493601 MRIQ9BWK5 157 aa20.75■□□□□ 0.91
PTPRU-208ENST00000493601 R3HDMLQ9H3Y0 253 aa20.75■□□□□ 0.91
PTPRU-208ENST00000493601 NOB1Q9ULX3 412 aaKnown RBP20.75■□□□□ 0.91
PTPRU-208ENST00000493601 IGF2BP3O00425 579 aaKnown RBP eCLIP20.74■□□□□ 0.91
PTPRU-208ENST00000493601 CIAO1O76071 339 aa20.74■□□□□ 0.91
PTPRU-208ENST00000493601 ATG9AQ7Z3C6 839 aa20.74■□□□□ 0.91
PTPRU-208ENST00000493601 CDAN1Q8IWY9 1227 aa20.74■□□□□ 0.91
PTPRU-208ENST00000493601 ELP3Q9H9T3 547 aa20.74■□□□□ 0.91
PTPRU-208ENST00000493601 GJA5P36382 358 aa20.73■□□□□ 0.91
PTPRU-208ENST00000493601 FBXO46Q6PJ61 603 aaPredicted RBP20.73■□□□□ 0.91
PTPRU-208ENST00000493601 WDR66Q8TBY9 1149 aa20.73■□□□□ 0.91
PTPRU-208ENST00000493601 OPTNQ96CV9 577 aa20.73■□□□□ 0.91
PTPRU-208ENST00000493601 SIL1Q9H173 461 aa20.73■□□□□ 0.91
PTPRU-208ENST00000493601 HTTP42858 3142 aa20.73■□□□□ 0.91
PTPRU-208ENST00000493601 FKBP1CQ5VVH2 108 aa20.72■□□□□ 0.91
PTPRU-208ENST00000493601 HHIPL2Q6UWX4 724 aa20.72■□□□□ 0.91
PTPRU-208ENST00000493601 HOOK2Q96ED9 719 aa20.72■□□□□ 0.91
PTPRU-208ENST00000493601 CSADQ9Y600 493 aa20.72■□□□□ 0.91
PTPRU-208ENST00000493601 RPAP1Q9BWH6 1393 aaPredicted RBP20.72■□□□□ 0.91
PTPRU-208ENST00000493601 CACNB3P54284 484 aa20.71■□□□□ 0.91
PTPRU-208ENST00000493601 VGLL4Q14135 290 aa20.71■□□□□ 0.91
PTPRU-208ENST00000493601 ATP2B3Q16720 1220 aa20.71■□□□□ 0.91
PTPRU-208ENST00000493601 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.71■□□□□ 0.91
PTPRU-208ENST00000493601 FAM83AQ86UY5 434 aa20.71■□□□□ 0.91
PTPRU-208ENST00000493601 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.71■□□□□ 0.91
PTPRU-208ENST00000493601 CEP126Q9P2H0 1117 aa20.71■□□□□ 0.91
PTPRU-208ENST00000493601 LRRFIP2Q9Y608 721 aaKnown RBP20.71■□□□□ 0.91
PTPRU-208ENST00000493601 TESPA1A2RU30 521 aaPredicted RBP20.7■□□□□ 0.9
PTPRU-208ENST00000493601 MAP3K9P80192 1104 aa20.7■□□□□ 0.9
PTPRU-208ENST00000493601 CRHR2Q13324 411 aa20.7■□□□□ 0.9
PTPRU-208ENST00000493601 APOBEC3HQ6NTF7 200 aaKnown RBP20.7■□□□□ 0.9
PTPRU-208ENST00000493601 GNL3LQ9NVN8 582 aaKnown RBP20.7■□□□□ 0.9
PTPRU-208ENST00000493601 IL15P40933 162 aaPredicted RBP20.69■□□□□ 0.9
PTPRU-208ENST00000493601 RARSP54136 660 aaKnown RBP20.69■□□□□ 0.9
PTPRU-208ENST00000493601 GTF2A2P52657 109 aa20.68■□□□□ 0.9
PTPRU-208ENST00000493601 ARHGAP45Q92619 1136 aa20.68■□□□□ 0.9
PTPRU-208ENST00000493601 ERO1AQ96HE7 468 aa20.68■□□□□ 0.9
PTPRU-208ENST00000493601 MS4A4AQ96JQ5 239 aa20.68■□□□□ 0.9
PTPRU-208ENST00000493601 MEIS3Q99687 375 aa20.68■□□□□ 0.9
PTPRU-208ENST00000493601 PTPN18Q99952 460 aa20.68■□□□□ 0.9
PTPRU-208ENST00000493601 SEMA3EO15041 775 aa20.67■□□□□ 0.9
PTPRU-208ENST00000493601 CNKSR2Q8WXI2 1034 aa20.67■□□□□ 0.9
PTPRU-208ENST00000493601 OTUD5Q96G74 571 aa20.67■□□□□ 0.9
PTPRU-208ENST00000493601 WRNIP1Q96S55 665 aa20.67■□□□□ 0.9
PTPRU-208ENST00000493601 TRIM17Q9Y577 477 aa20.67■□□□□ 0.9
PTPRU-208ENST00000493601 PDE4DIPQ5VU43 2346 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 LDHBP07195 334 aaKnown RBP20.66■□□□□ 0.9
PTPRU-208ENST00000493601 GNAI3P08754 354 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 DCAF15Q66K64 600 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 INTS3Q68E01 1043 aaKnown RBP20.66■□□□□ 0.9
PTPRU-208ENST00000493601 OTOP1Q7RTM1 612 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 COPRSQ9NQ92 184 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 DENND2AQ9ULE3 1009 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 PA2G4Q9UQ80 394 aaKnown RBP20.66■□□□□ 0.9
PTPRU-208ENST00000493601 DAGLAQ9Y4D2 1042 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 SALL1Q9NSC2 1324 aa20.66■□□□□ 0.9
PTPRU-208ENST00000493601 CCL15-CCL14A0A0B4J2E2 113 aa20.65■□□□□ 0.9
PTPRU-208ENST00000493601 SPDYE5A6NIY4 337 aa20.65■□□□□ 0.9
PTPRU-208ENST00000493601 PRDX5P30044 214 aa20.65■□□□□ 0.9
PTPRU-208ENST00000493601 CCL15Q16663 113 aa20.65■□□□□ 0.9
PTPRU-208ENST00000493601 BRI3BPQ8WY22 251 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms