RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CHRDL2Q6WN34 429 aa18.17■□□□□ 0.5
PRPF40A-211ENST00000493468 SH3TC2Q8TF17 1288 aa18.17■□□□□ 0.5
PRPF40A-211ENST00000493468 SLC4A2P04920 1241 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 CETPP11597 493 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 TNNI2P48788 182 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 FLIIQ13045 1269 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 MFSD14BQ5SR56 506 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 CDAN1Q8IWY9 1227 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 DZIP1LQ8IYY4 767 aaKnown RBP18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 DNAAF4Q8WXU2 420 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 SHISA4Q96DD7 197 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 TDRD3Q9H7E2 651 aaKnown RBP18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 TTF2Q9UNY4 1162 aaKnown RBP18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 JAG2Q9Y219 1238 aa18.16■□□□□ 0.5
PRPF40A-211ENST00000493468 FOXO4P98177 505 aa18.15■□□□□ 0.5
PRPF40A-211ENST00000493468 TWISTNBQ3B726 338 aaPredicted RBP18.15■□□□□ 0.5
PRPF40A-211ENST00000493468 TDRD7Q8NHU6 1098 aaKnown RBP18.15■□□□□ 0.5
PRPF40A-211ENST00000493468 ARHGAP39Q9C0H5 1083 aa18.15■□□□□ 0.5
PRPF40A-211ENST00000493468 TMEM39BQ9GZU3 492 aa18.15■□□□□ 0.5
PRPF40A-211ENST00000493468 ERO1BQ86YB8 467 aa18.14■□□□□ 0.49
PRPF40A-211ENST00000493468 NKX2-3Q8TAU0 364 aa18.14■□□□□ 0.49
PRPF40A-211ENST00000493468 TSR2Q969E8 191 aaKnown RBP18.14■□□□□ 0.49
PRPF40A-211ENST00000493468 PRO3102Q9H379 93 aa18.14■□□□□ 0.49
PRPF40A-211ENST00000493468 RBM27Q9P2N5 1060 aaKnown RBP18.14■□□□□ 0.49
PRPF40A-211ENST00000493468 SNCAIPQ9Y6H5 919 aa18.14■□□□□ 0.49
PRPF40A-211ENST00000493468 TCP10L2B9ZVM9 353 aa18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 BTBD19C9JJ37 291 aa18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 MYCP01106 439 aaPredicted RBP18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 CRKP46108 304 aa18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 FKBP5Q13451 457 aaPredicted RBP18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 SNAPC2Q13487 334 aa18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 UBE2Q1Q7Z7E8 422 aa18.13■□□□□ 0.49
PRPF40A-211ENST00000493468 HDLBPQ00341 1268 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-211ENST00000493468 PPIL2Q13356 520 aa18.12■□□□□ 0.49
PRPF40A-211ENST00000493468 UBE4AQ14139 1066 aa18.12■□□□□ 0.49
PRPF40A-211ENST00000493468 HTATIP2Q9BUP3 242 aa18.12■□□□□ 0.49
PRPF40A-211ENST00000493468 GJA8P48165 433 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 C17orf99Q6UX52 265 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 LDHAL6AQ6ZMR3 332 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 DPF3Q92784 378 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 HOOK2Q96ED9 719 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 SRRDQ9UH36 339 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 CHMP3Q9Y3E7 222 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 RPAP1Q9BWH6 1393 aaPredicted RBP18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 MGAMO43451 1857 aa18.11■□□□□ 0.49
PRPF40A-211ENST00000493468 IRF6O14896 467 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 GJB1P08034 283 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 HIBADHP31937 336 aaKnown RBP18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 DDX10Q13206 875 aaKnown RBP18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 MTFR1Q15390 333 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 CCDC27Q2M243 656 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 CCDC57Q2TAC2 916 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 LMBR1LQ6UX01 489 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 WRNIP1Q96S55 665 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 CNNM1Q9NRU3 951 aa18.1■□□□□ 0.49
PRPF40A-211ENST00000493468 COL6A3P12111 3177 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 ADGRA2Q96PE1 1338 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 A0A1W2PPC1 479 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 HOXD10P28358 340 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 TAF7LQ5H9L4 462 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 FKBP1CQ5VVH2 108 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 FAM83AQ86UY5 434 aa18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 FAM84BQ96KN1 310 aaPredicted RBP18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 PRKRIP1Q9H875 184 aaPredicted RBP18.09■□□□□ 0.49
PRPF40A-211ENST00000493468 IL16Q14005 1332 aa18.08■□□□□ 0.49
PRPF40A-211ENST00000493468 PLIN1O60240 522 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 CTGFP29279 349 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 GRK4P32298 578 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 GYG1P46976 350 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 PPATQ06203 517 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 ANKRD23Q86SG2 305 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 TBC1D22AQ8WUA7 517 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 ZNF594Q96JF6 807 aaPredicted RBP18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 TRIM47Q96LD4 638 aa18.08■□□□□ 0.48
PRPF40A-211ENST00000493468 LAMA3Q16787 3333 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 OSBPP22059 807 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 PSMC4P43686 418 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 EPHA10Q5JZY3 1008 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 BEND3Q5T5X7 828 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 DCAF15Q66K64 600 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 RAET1EQ8TD07 263 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 ZKSCAN4Q969J2 545 aaPredicted RBP18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 MRIQ9BWK5 157 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 RIPOR2Q9Y4F9 1068 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 NR2E3Q9Y5X4 410 aa18.07■□□□□ 0.48
PRPF40A-211ENST00000493468 DLL1O00548 723 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 CCL5P13501 91 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 CAPN2P17655 700 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 TEKT1Q969V4 418 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 ZDHHC15Q96MV8 337 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 TMOD2Q9NZR1 351 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 CUL9Q8IWT3 2517 aa18.06■□□□□ 0.48
PRPF40A-211ENST00000493468 MYPNQ86TC9 1320 aa18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 GRM8O00222 908 aa18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 ZBTB7BO15156 539 aaPredicted RBP18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 UBXN2AP68543 259 aa18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 WWC1Q8IX03 1113 aa18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 SLC17A8Q8NDX2 589 aa18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 CPA4Q9UI42 421 aa18.05■□□□□ 0.48
PRPF40A-211ENST00000493468 KCNH4Q9UQ05 1017 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms