RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, human

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LYSMD4-208	ENST00000493256	RARS	P54136	660 aa	Known RBP	27.7	■■■□□ 2.02
LYSMD4-208	ENST00000493256	ATG9A	Q7Z3C6	839 aa		27.7	■■■□□ 2.02
LYSMD4-208	ENST00000493256	USP2	O75604	605 aa	Predicted RBP	27.69	■■■□□ 2.02
LYSMD4-208	ENST00000493256	CTU1	Q7Z7A3	348 aa	Known RBP	27.69	■■■□□ 2.02
LYSMD4-208	ENST00000493256	UNCX	A6NJT0	531 aa		27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	SLC5A1	P13866	664 aa		27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	IREB2	P48200	963 aa	Known RBP	27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	HDLBP	Q00341	1268 aa	Known RBP	27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	CDAN1	Q8IWY9	1227 aa		27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	ZNF296	Q8WUU4	475 aa	Predicted RBP	27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	WNK4	Q96J92	1243 aa		27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	SIL1	Q9H173	461 aa		27.68	■■■□□ 2.02
LYSMD4-208	ENST00000493256	TCP10L2	B9ZVM9	353 aa		27.67	■■■□□ 2.02
LYSMD4-208	ENST00000493256	LPIN2	Q92539	896 aa		27.67	■■■□□ 2.02
LYSMD4-208	ENST00000493256	TEPSIN	Q96N21	525 aa		27.67	■■■□□ 2.02
LYSMD4-208	ENST00000493256	LRRFIP2	Q9Y608	721 aa	Known RBP	27.67	■■■□□ 2.02
LYSMD4-208	ENST00000493256	OTOF	Q9HC10	1997 aa		27.66	■■■□□ 2.02
LYSMD4-208	ENST00000493256	MANSC4	A6NHS7	340 aa	Predicted RBP	27.66	■■■□□ 2.02
LYSMD4-208	ENST00000493256	ZBTB48	P10074	688 aa	Predicted RBP	27.66	■■■□□ 2.02
LYSMD4-208	ENST00000493256	RGS19	P49795	217 aa		27.66	■■■□□ 2.02
LYSMD4-208	ENST00000493256	TEKT1	Q969V4	418 aa		27.66	■■■□□ 2.02
LYSMD4-208	ENST00000493256	MYH13	Q9UKX3	1938 aa		27.66	■■■□□ 2.02
LYSMD4-208	ENST00000493256	LAMB1	P07942	1786 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	CIAO1	O76071	339 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	MEIS3	Q99687	375 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	CFHR5	Q9BXR6	569 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	TMEM39B	Q9GZU3	492 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	R3HDML	Q9H3Y0	253 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	FBXO3	Q9UK99	471 aa		27.65	■■■□□ 2.02
LYSMD4-208	ENST00000493256	GPR25	O00155	361 aa		27.64	■■■□□ 2.02
LYSMD4-208	ENST00000493256	NOM1	Q5C9Z4	860 aa	Known RBP	27.64	■■■□□ 2.02
LYSMD4-208	ENST00000493256	ANKRD13A	Q8IZ07	590 aa		27.64	■■■□□ 2.02
LYSMD4-208	ENST00000493256	ZDHHC15	Q96MV8	337 aa		27.64	■■■□□ 2.02
LYSMD4-208	ENST00000493256	SUGT1	Q9Y2Z0	365 aa		27.64	■■■□□ 2.02
LYSMD4-208	ENST00000493256	GJA5	P36382	358 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	TNNI2	P48788	182 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	CACNB3	P54284	484 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	INHBE	P58166	350 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	ARHGAP45	Q92619	1136 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	MRI	Q9BWK5	157 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	CEP126	Q9P2H0	1117 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	HDAC5	Q9UQL6	1122 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	MAST3	O60307	1309 aa		27.63	■■■□□ 2.01
LYSMD4-208	ENST00000493256	ATP2B3	Q16720	1220 aa		27.62	■■■□□ 2.01
LYSMD4-208	ENST00000493256	IFNL1	Q8IU54	200 aa		27.62	■■■□□ 2.01
LYSMD4-208	ENST00000493256	PA2G4	Q9UQ80	394 aa	Known RBP	27.62	■■■□□ 2.01
LYSMD4-208	ENST00000493256	ALDH1A1	P00352	501 aa		27.61	■■■□□ 2.01
LYSMD4-208	ENST00000493256	INTS3	Q68E01	1043 aa	Known RBP	27.61	■■■□□ 2.01
LYSMD4-208	ENST00000493256	APOBEC3H	Q6NTF7	200 aa	Known RBP	27.61	■■■□□ 2.01
LYSMD4-208	ENST00000493256	WDR66	Q8TBY9	1149 aa		27.61	■■■□□ 2.01
LYSMD4-208	ENST00000493256	IGF2BP3	O00425	579 aa	Known RBP eCLIP	27.6	■■■□□ 2.01
LYSMD4-208	ENST00000493256	MLLT1	Q03111	559 aa	Predicted RBP	27.6	■■■□□ 2.01
LYSMD4-208	ENST00000493256	ELP3	Q9H9T3	547 aa		27.6	■■■□□ 2.01
LYSMD4-208	ENST00000493256	IL15	P40933	162 aa	Predicted RBP	27.59	■■■□□ 2.01
LYSMD4-208	ENST00000493256	COPRS	Q9NQ92	184 aa		27.59	■■■□□ 2.01
LYSMD4-208	ENST00000493256	FKTN	O75072	461 aa		27.58	■■■□□ 2.01
LYSMD4-208	ENST00000493256	HHIPL2	Q6UWX4	724 aa		27.58	■■■□□ 2.01
LYSMD4-208	ENST00000493256	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	27.58	■■■□□ 2.01
LYSMD4-208	ENST00000493256	TMOD2	Q9NZR1	351 aa		27.58	■■■□□ 2.01
LYSMD4-208	ENST00000493256	PKN2	Q16513	984 aa	Known RBP	27.57	■■■□□ 2
LYSMD4-208	ENST00000493256	OPTN	Q96CV9	577 aa		27.57	■■■□□ 2
LYSMD4-208	ENST00000493256	GNAI3	P08754	354 aa		27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	PHKA1	P46020	1223 aa		27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	VGLL4	Q14135	290 aa		27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	FKBP1C	Q5VVH2	108 aa		27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	FAM83A	Q86UY5	434 aa		27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	HPS5	Q9UPZ3	1129 aa		27.56	■■■□□ 2
LYSMD4-208	ENST00000493256	TRIM27	P14373	513 aa		27.55	■■■□□ 2
LYSMD4-208	ENST00000493256	MAP3K9	P80192	1104 aa		27.55	■■■□□ 2
LYSMD4-208	ENST00000493256	CNKSR2	Q8WXI2	1034 aa		27.55	■■■□□ 2
LYSMD4-208	ENST00000493256	GNL3L	Q9NVN8	582 aa	Known RBP	27.55	■■■□□ 2
LYSMD4-208	ENST00000493256	TNN	Q9UQP3	1299 aa		27.55	■■■□□ 2
LYSMD4-208	ENST00000493256	TESPA1	A2RU30	521 aa	Predicted RBP	27.54	■■■□□ 2
LYSMD4-208	ENST00000493256	IPO8	O15397	1037 aa	Known RBP	27.54	■■■□□ 2
LYSMD4-208	ENST00000493256	BCAR3	O75815	825 aa		27.54	■■■□□ 2
LYSMD4-208	ENST00000493256	PRDX5	P30044	214 aa		27.54	■■■□□ 2
LYSMD4-208	ENST00000493256	ADORA1	P30542	326 aa		27.54	■■■□□ 2
LYSMD4-208	ENST00000493256	PTPN18	Q99952	460 aa		27.54	■■■□□ 2
LYSMD4-208	ENST00000493256	SRGAP3	O43295	1099 aa		27.53	■■■□□ 2
LYSMD4-208	ENST00000493256	SOX10	P56693	466 aa		27.53	■■■□□ 2
LYSMD4-208	ENST00000493256	MTX1	Q13505	466 aa		27.53	■■■□□ 2
LYSMD4-208	ENST00000493256	DIXDC1	Q155Q3	683 aa		27.53	■■■□□ 2
LYSMD4-208	ENST00000493256	DAGLA	Q9Y4D2	1042 aa		27.53	■■■□□ 2
LYSMD4-208	ENST00000493256	RPAP1	Q9BWH6	1393 aa	Predicted RBP	27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	SEMA3E	O15041	775 aa		27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	OTUD7B	Q6GQQ9	843 aa		27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	ATF7IP	Q6VMQ6	1270 aa		27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	FRAT1	Q92837	279 aa	Predicted RBP	27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	MS4A4A	Q96JQ5	239 aa		27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	DENND2A	Q9ULE3	1009 aa		27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	CSAD	Q9Y600	493 aa		27.52	■■■□□ 2
LYSMD4-208	ENST00000493256	SALL1	Q9NSC2	1324 aa		27.51	■■□□□ 1.99
LYSMD4-208	ENST00000493256	LDHB	P07195	334 aa	Known RBP	27.51	■■□□□ 1.99
LYSMD4-208	ENST00000493256	CCDC102B	Q68D86	513 aa		27.51	■■□□□ 1.99
LYSMD4-208	ENST00000493256	CRHR2	Q13324	411 aa		27.5	■■□□□ 1.99
LYSMD4-208	ENST00000493256	FBXO46	Q6PJ61	603 aa	Predicted RBP	27.5	■■□□□ 1.99
LYSMD4-208	ENST00000493256	ZBTB22	O15209	634 aa		27.49	■■□□□ 1.99
LYSMD4-208	ENST00000493256	TIMM10	P62072	90 aa		27.49	■■□□□ 1.99
LYSMD4-208	ENST00000493256	CDC42EP5	Q6NZY7	148 aa		27.49	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms