RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	RGS22	Q8NE09	1264 aa		11.25	□□□□□ -0.61
ERCC3-208	ENST00000491292	PCDHA5	Q9Y5H7	936 aa		11.25	□□□□□ -0.61
ERCC3-208	ENST00000491292	ADCY9	O60503	1353 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	KNDC1	Q76NI1	1749 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	PTPRM	P28827	1452 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	MNAT1	P51948	309 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	NBPF11	Q86T75	865 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	ANKRD20A12P	Q8NF67	263 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	MPHOSPH8	Q99549	860 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	CPS1	P31327	1500 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	ZMYND10	O75800	440 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	MTF1	Q14872	753 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	CTR9	Q6PD62	1173 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	LLPH	Q9BRT6	129 aa	Known RBP	11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	GOLGA8A	A7E2F4	631 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	POLR2D	O15514	142 aa	Known RBP	11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	H2AFX	P16104	143 aa	Predicted RBP	11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	HDX	Q7Z353	690 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	FAM107B	Q9H098	131 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	LCMT1	Q9UIC8	334 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	KCNH3	Q9ULD8	1083 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	MAPK8IP1	Q9UQF2	711 aa		11.24	□□□□□ -0.61
ERCC3-208	ENST00000491292	PATL2	C9JE40	543 aa	Known RBP	11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	TADA3	O75528	432 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	CTAGE9	A4FU28	777 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	GOLGA6L9	A6NEM1	432 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	N4BP3	O15049	544 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	SBNO1	A3KN83	1393 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	YEATS2	Q9ULM3	1422 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	SOWAHD	A6NJG2	315 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	HSPD1	P10809	573 aa	Known RBP	11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	SET	Q01105	290 aa	Predicted RBP	11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	CMTR1	Q8N1G2	835 aa	Known RBP	11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	IGSF22	Q8N9C0	903 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	KBTBD3	Q8NAB2	608 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	NFATC2IP	Q8NCF5	419 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	NCOA7	Q8NI08	942 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	DACH1	Q9UI36	760 aa		11.23	□□□□□ -0.61
ERCC3-208	ENST00000491292	ZC3H13	Q5T200	1668 aa	Known RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	CARMIL3	Q8ND23	1372 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	FOXN1	O15353	648 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	TTC19	Q6DKK2	380 aa	Predicted RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	ZKSCAN3	Q9BRR0	538 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	SASH3	O75995	380 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	TFRC	P02786	760 aa	Known RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	IVL	P07476	585 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	SART3	Q15020	963 aa	Known RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	KIAA1328	Q86T90	577 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	VPS37D	Q86XT2	251 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	RTEL1	Q9NZ71	1219 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	IGSF1	Q8N6C5	1336 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	AKR1B15	C9JRZ8	316 aa	Predicted RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	N4BP1	O75113	896 aa	Known RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	ATP5J	P18859	108 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	CCDC57	Q2TAC2	916 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	CCDC70	Q6NSX1	233 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	VPS16	Q9H269	839 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	SAMSN1	Q9NSI8	373 aa	Known RBP	11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	KCNJ14	Q9UNX9	436 aa		11.22	□□□□□ -0.61
ERCC3-208	ENST00000491292	ARHGEF10	O15013	1369 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292		A0A1B0GUL7	405 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	IFIT3	O14879	490 aa	Known RBP	11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	GIGYF1	O75420	1035 aa	Predicted RBP	11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	CTDNEP1	O95476	244 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	ACTN2	P35609	894 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	GCKR	Q14397	625 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	SPECC1L	Q69YQ0	1117 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	KRT40	Q6A162	431 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	SLF1	Q9BQI6	1058 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	PHLPP2	Q6ZVD8	1323 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	ERICH2	A1L162	156 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	RNMT	O43148	476 aa	Known RBP	11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	TUBB4A	P04350	444 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	TMEM67	Q5HYA8	995 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	RBM43	Q6ZSC3	357 aa	Known RBP	11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	TRIM22	Q8IYM9	498 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	FBXO18	Q8NFZ0	1043 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	GOLGA5	Q8TBA6	731 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	CDC5L	Q99459	802 aa	Known RBP	11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	GBP3	Q9H0R5	595 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	ABCB6	Q9NP58	842 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	SERTAD1	Q9UHV2	236 aa		11.21	□□□□□ -0.61
ERCC3-208	ENST00000491292	VWDE	Q8N2E2	1590 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	hCG_1642624	A0A1W2PR95	340 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	RNF113A	O15541	343 aa	Known RBP	11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	TBC1D8	O95759	1140 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	TXLNA	P40222	546 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	CEP112	Q8N8E3	955 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	CCDC148	Q8NFR7	591 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	EEF2KMT	Q96G04	330 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292	L2HGDH	Q9H9P8	463 aa		11.21	□□□□□ -0.62
ERCC3-208	ENST00000491292		B4E1Z4	1266 aa		11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	ENC1	O14682	589 aa		11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	CDKL5	O76039	1030 aa		11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	BRAP	Q7Z569	592 aa		11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	ENGASE	Q8NFI3	743 aa		11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	JADE2	Q9NQC1	790 aa		11.2	□□□□□ -0.62
ERCC3-208	ENST00000491292	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms