RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 C16orf71Q8IYS4 520 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-229ENST00000490866 TTLL6Q8N841 843 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 CCDC85AQ96PX6 553 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-229ENST00000490866 ADAM33Q9BZ11 813 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 ZC3H12CQ9C0D7 883 aaKnown RBP8.41□□□□□ -1.06
SYNE1-229ENST00000490866 CCDC8Q9H0W5 538 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-229ENST00000490866 SPON1Q9HCB6 807 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 SEC31BQ9NQW1 1179 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 PIM2Q9P1W9 311 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 DBNLQ9UJU6 430 aaKnown RBP8.41□□□□□ -1.06
SYNE1-229ENST00000490866 GGA1Q9UJY5 639 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 SUGT1Q9Y2Z0 365 aa8.41□□□□□ -1.06
SYNE1-229ENST00000490866 DDX60Q8IY21 1712 aaKnown RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 RAD50Q92878 1312 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 PPEF1O14829 653 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 FRAT2O75474 233 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 SDSP20132 328 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 MCCP23508 829 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 ARID4AP29374 1257 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 MAP3K12Q12852 859 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 CCDC102BQ68D86 513 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 MPNDQ8N594 471 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 WDR66Q8TBY9 1149 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 PI4K2BQ8TCG2 481 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 TBC1D22AQ8WUA7 517 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 CELF1Q92879 486 aaKnown RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 RILPL2Q969X0 211 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 PUS3Q9BZE2 481 aaKnown RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 DIAPH3Q9NSV4 1193 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 PAG1Q9NWQ8 432 aa8.4□□□□□ -1.06
SYNE1-229ENST00000490866 NSFL1CQ9UNZ2 370 aaKnown RBP8.4□□□□□ -1.06
SYNE1-229ENST00000490866 PPP1R3GB7ZBB8 358 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 NT5C2P49902 561 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 WASHC4Q2M389 1173 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 DMRTA1Q5VZB9 504 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 DPP8Q6V1X1 898 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-229ENST00000490866 PODNQ7Z5L7 613 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 FBXO33Q7Z6M2 555 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 KBTBD3Q8NAB2 608 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 SPATA5Q8NB90 893 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 ZNF622Q969S3 477 aaKnown RBP eCLIP8.39□□□□□ -1.07
SYNE1-229ENST00000490866 DBNDD2Q9BQY9 259 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 COA1Q9GZY4 146 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 HELLSQ9NRZ9 838 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 VPS9D1Q9Y2B5 631 aa8.39□□□□□ -1.07
SYNE1-229ENST00000490866 SPEF2Q9C093 1822 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 HRO43593 1189 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 MAP4K4O95819 1239 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-229ENST00000490866 LDHCP07864 332 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 GSTO1P78417 241 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 FKBP4Q02790 459 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-229ENST00000490866 R3HDM1Q15032 1099 aaKnown RBP8.38□□□□□ -1.07
SYNE1-229ENST00000490866 UBE3CQ15386 1083 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 RNF20Q5VTR2 975 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 SMIM5Q71RC9 77 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 PSMD1Q99460 953 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 FSD1Q9BTV5 496 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 MRIQ9BWK5 157 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 RTFDC1Q9BY42 306 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-229ENST00000490866 BOLA2Q9H3K6 86 aa8.38□□□□□ -1.07
SYNE1-229ENST00000490866 RPAP1Q9BWH6 1393 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-229ENST00000490866 MED23Q9ULK4 1368 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 SALL1Q9NSC2 1324 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 C6orf229H3BNL8 230 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 IL1R1P14778 569 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 GNAT2P19087 354 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 CHMLP26374 656 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 FKBP1AP62942 108 aaKnown RBP8.37□□□□□ -1.07
SYNE1-229ENST00000490866 MCMDC2Q4G0Z9 681 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 CCDC93Q567U6 631 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 DALRD3Q5D0E6 543 aaKnown RBP8.37□□□□□ -1.07
SYNE1-229ENST00000490866 C6orf132Q5T0Z8 1188 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 TBC1D16Q8TBP0 767 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 DDX12PQ92771 950 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 RNF166Q96A37 237 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-229ENST00000490866 FAM84BQ96KN1 310 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-229ENST00000490866 ZBED2Q9BTP6 218 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 SNRKQ9NRH2 765 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 CTNNA3Q9UI47 895 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 ZNF609O15014 1411 aa8.37□□□□□ -1.07
SYNE1-229ENST00000490866 MAST3O60307 1309 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 RNF113AO15541 343 aaKnown RBP8.36□□□□□ -1.07
SYNE1-229ENST00000490866 TAF5LO75529 589 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 GSPT1P15170 499 aaKnown RBP8.36□□□□□ -1.07
SYNE1-229ENST00000490866 ZKSCAN1P17029 563 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-229ENST00000490866 ANAPC15P60006 121 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 C8orf34Q49A92 452 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 MSL1Q68DK7 614 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 PRPF40BQ6NWY9 871 aaKnown RBP8.36□□□□□ -1.07
SYNE1-229ENST00000490866 TBC1D9Q6ZT07 1266 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 TDRD7Q8NHU6 1098 aaKnown RBP8.36□□□□□ -1.07
SYNE1-229ENST00000490866 CHMP4CQ96CF2 233 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 DDRGK1Q96HY6 314 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 BCL11AQ9H165 835 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 LRP2BPQ9P2M1 347 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 C10orf71Q711Q0 1435 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 TUBGCP6Q96RT7 1819 aa8.36□□□□□ -1.07
SYNE1-229ENST00000490866 UFL1O94874 794 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 ZBTB7AO95365 584 aa8.35□□□□□ -1.07
SYNE1-229ENST00000490866 BAG3O95817 575 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms