RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 TMOD2Q9NZR1 351 aa12.94□□□□□ -0.34
TTC28-207ENST00000490475 LAMB1P07942 1786 aa12.94□□□□□ -0.34
TTC28-207ENST00000490475 CLRN2A0PK11 232 aa12.93□□□□□ -0.34
TTC28-207ENST00000490475 FKTNO75072 461 aa12.93□□□□□ -0.34
TTC28-207ENST00000490475 TBC1D8O95759 1140 aa12.93□□□□□ -0.34
TTC28-207ENST00000490475 DZIP1LQ8IYY4 767 aaKnown RBP12.93□□□□□ -0.34
TTC28-207ENST00000490475 ANKRD44Q8N8A2 993 aa12.93□□□□□ -0.34
TTC28-207ENST00000490475 ZNF296Q8WUU4 475 aaPredicted RBP12.93□□□□□ -0.34
TTC28-207ENST00000490475 TEKT1Q969V4 418 aa12.93□□□□□ -0.34
TTC28-207ENST00000490475 PUS3Q9BZE2 481 aaKnown RBP12.93□□□□□ -0.34
TTC28-207ENST00000490475 USP44Q9H0E7 712 aa12.93□□□□□ -0.34
TTC28-207ENST00000490475 ZNF70Q9UC06 446 aaPredicted RBP12.93□□□□□ -0.34
TTC28-207ENST00000490475 WDHD1O75717 1129 aaPredicted RBP12.92□□□□□ -0.34
TTC28-207ENST00000490475 SLC5A1P13866 664 aa12.92□□□□□ -0.34
TTC28-207ENST00000490475 CRKP46108 304 aa12.92□□□□□ -0.34
TTC28-207ENST00000490475 PDE4DIPQ5VU43 2346 aa12.92□□□□□ -0.34
TTC28-207ENST00000490475 FKBP1CQ5VVH2 108 aa12.92□□□□□ -0.34
TTC28-207ENST00000490475 VGLL2Q8N8G2 317 aa12.92□□□□□ -0.34
TTC28-207ENST00000490475 WNK4Q96J92 1243 aa12.92□□□□□ -0.34
TTC28-207ENST00000490475 API5Q9BZZ5 524 aaKnown RBP12.92□□□□□ -0.34
TTC28-207ENST00000490475 EYA2O00167 538 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 UBTFL1P0CB47 393 aaPredicted RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 MKRN3Q13064 507 aaKnown RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 ARHGEF6Q15052 776 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 LRRC24Q50LG9 513 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 NBPF12Q5TAG4 269 aaPredicted RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 FBXO46Q6PJ61 603 aaPredicted RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 IFNL1Q8IU54 200 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 WDR66Q8TBY9 1149 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 LPIN2Q92539 896 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 FRAT1Q92837 279 aaPredicted RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 YTHDC1Q96MU7 727 aaKnown RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 TDRD3Q9H7E2 651 aaKnown RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 GNL3LQ9NVN8 582 aaKnown RBP12.91□□□□□ -0.34
TTC28-207ENST00000490475 JAG2Q9Y219 1238 aa12.91□□□□□ -0.34
TTC28-207ENST00000490475 MYH13Q9UKX3 1938 aa12.9□□□□□ -0.34
TTC28-207ENST00000490475 USP2O75604 605 aaPredicted RBP12.9□□□□□ -0.34
TTC28-207ENST00000490475 CIAO1O76071 339 aa12.9□□□□□ -0.34
TTC28-207ENST00000490475 CHAF1AQ13111 956 aaPredicted RBP12.9□□□□□ -0.34
TTC28-207ENST00000490475 HHIPL2Q6UWX4 724 aa12.9□□□□□ -0.34
TTC28-207ENST00000490475 FAM83AQ86UY5 434 aa12.9□□□□□ -0.34
TTC28-207ENST00000490475 ZDHHC15Q96MV8 337 aa12.9□□□□□ -0.34
TTC28-207ENST00000490475 CSADQ9Y600 493 aa12.9□□□□□ -0.34
TTC28-207ENST00000490475 SSC5DA1L4H1 1573 aa12.9□□□□□ -0.35
TTC28-207ENST00000490475 FGFR2P21802 821 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 DCAF15Q66K64 600 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 ARHGAP45Q92619 1136 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 ERO1AQ96HE7 468 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 CEP126Q9P2H0 1117 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 HPS5Q9UPZ3 1129 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 TNNQ9UQP3 1299 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 PCDHAC2Q9Y5I4 1007 aa12.89□□□□□ -0.35
TTC28-207ENST00000490475 TESPA1A2RU30 521 aaPredicted RBP12.88□□□□□ -0.35
TTC28-207ENST00000490475 TCP10L2B9ZVM9 353 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 SEMA3EO15041 775 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 ZBTB22O15209 634 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 IPO8O15397 1037 aaKnown RBP12.88□□□□□ -0.35
TTC28-207ENST00000490475 BCAMP50895 628 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 GTF2A2P52657 109 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 MAP3K9P80192 1104 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 ZGPATQ8N5A5 531 aaKnown RBP12.88□□□□□ -0.35
TTC28-207ENST00000490475 CLMNQ96JQ2 1002 aa12.88□□□□□ -0.35
TTC28-207ENST00000490475 RPAP1Q9BWH6 1393 aaPredicted RBP12.88□□□□□ -0.35
TTC28-207ENST00000490475 IL15P40933 162 aaPredicted RBP12.87□□□□□ -0.35
TTC28-207ENST00000490475 INTS3Q68E01 1043 aaKnown RBP12.87□□□□□ -0.35
TTC28-207ENST00000490475 CLUAP1Q96AJ1 413 aa12.87□□□□□ -0.35
TTC28-207ENST00000490475 OPTNQ96CV9 577 aa12.87□□□□□ -0.35
TTC28-207ENST00000490475 TEPSINQ96N21 525 aa12.87□□□□□ -0.35
TTC28-207ENST00000490475 ZCCHC17Q9NP64 241 aaKnown RBP12.87□□□□□ -0.35
TTC28-207ENST00000490475 IQSEC3Q9UPP2 1182 aaPredicted RBP12.87□□□□□ -0.35
TTC28-207ENST00000490475 GNAI3P08754 354 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 TRIM27P14373 513 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 RFX5P48382 616 aaPredicted RBP12.86□□□□□ -0.35
TTC28-207ENST00000490475 ATF7IPQ6VMQ6 1270 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 SLF2Q8IX21 1173 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.86□□□□□ -0.35
TTC28-207ENST00000490475 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 TMEM39BQ9GZU3 492 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 DENND2AQ9ULE3 1009 aa12.86□□□□□ -0.35
TTC28-207ENST00000490475 OTOFQ9HC10 1997 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 IGF2BP3O00425 579 aaKnown RBP eCLIP12.85□□□□□ -0.35
TTC28-207ENST00000490475 ATP2B3Q16720 1220 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 ZKSCAN2Q63HK3 967 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 ERO1BQ86YB8 467 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 ELP3Q9H9T3 547 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 ZFYVE28Q9HCC9 887 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 FZD1Q9UP38 647 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 AKAP2Q9Y2D5 859 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 SALL1Q9NSC2 1324 aa12.85□□□□□ -0.35
TTC28-207ENST00000490475 SPDYE5A6NIY4 337 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 LDHBP07195 334 aaKnown RBP12.84□□□□□ -0.35
TTC28-207ENST00000490475 CETPP11597 493 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 SOX10P56693 466 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 SP3Q02447 781 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 VGLL4Q14135 290 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 APOBEC3HQ6NTF7 200 aaKnown RBP12.84□□□□□ -0.35
TTC28-207ENST00000490475 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.84□□□□□ -0.35
TTC28-207ENST00000490475 ATG9AQ7Z3C6 839 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 FAM151AQ8WW52 585 aa12.84□□□□□ -0.35
TTC28-207ENST00000490475 COPRSQ9NQ92 184 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms