RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 ALKBH8Q96BT7 664 aaKnown RBP7.11□□□□□ -1.27
XRN1-213ENST00000489241 TMPRSS13Q9BYE2 586 aa7.11□□□□□ -1.27
XRN1-213ENST00000489241 NIF3L1Q9GZT8 377 aa7.11□□□□□ -1.27
XRN1-213ENST00000489241 SUGCTQ9HAC7 445 aa7.11□□□□□ -1.27
XRN1-213ENST00000489241 COL19A1Q14993 1142 aa7.1□□□□□ -1.27
XRN1-213ENST00000489241 NUTM2GQ5VZR2 741 aa7.1□□□□□ -1.27
XRN1-213ENST00000489241 INTS5Q6P9B9 1019 aaKnown RBP7.1□□□□□ -1.27
XRN1-213ENST00000489241 GALNT12Q8IXK2 581 aa7.1□□□□□ -1.27
XRN1-213ENST00000489241 CYP4F12Q9HCS2 524 aa7.1□□□□□ -1.27
XRN1-213ENST00000489241 METTL12A8MUP2 240 aa7.09□□□□□ -1.27
XRN1-213ENST00000489241 TREHO43280 583 aa7.09□□□□□ -1.27
XRN1-213ENST00000489241 MED26O95402 600 aa7.09□□□□□ -1.27
XRN1-213ENST00000489241 TIAF1O95411 115 aa7.09□□□□□ -1.27
XRN1-213ENST00000489241 POLR3DP05423 398 aaPredicted RBP7.09□□□□□ -1.27
XRN1-213ENST00000489241 CCNJLQ8IV13 435 aa7.09□□□□□ -1.27
XRN1-213ENST00000489241 SMG8Q8ND04 991 aaKnown RBP7.09□□□□□ -1.27
XRN1-213ENST00000489241 PRR19A6NJB7 356 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 GPR182O15218 404 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 ZNF16P17020 682 aaPredicted RBP7.08□□□□□ -1.28
XRN1-213ENST00000489241 SPINK2P20155 84 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 MAP4P27816 1152 aaKnown RBP7.08□□□□□ -1.28
XRN1-213ENST00000489241 FGD1P98174 961 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 GSTM4Q03013 218 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 DSC3Q14574 896 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 NPAS4Q8IUM7 802 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 C12orf50Q8NA57 414 aaPredicted RBP7.08□□□□□ -1.28
XRN1-213ENST00000489241 SHKBP1Q8TBC3 707 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 DNAJC25Q9H1X3 360 aa7.08□□□□□ -1.28
XRN1-213ENST00000489241 CLEC4MQ9H2X3 399 aaPredicted RBP7.08□□□□□ -1.28
XRN1-213ENST00000489241 KIAA1522Q9P206 1035 aaPredicted RBP7.08□□□□□ -1.28
XRN1-213ENST00000489241 A0A096LPE4 126 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 A0A1W2PP55 124 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 A0A1W2PPZ6 126 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 CPNE3O75131 537 aaKnown RBP7.07□□□□□ -1.28
XRN1-213ENST00000489241 DLGAP3O95886 979 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 IGHA2P01877 340 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 PCDH1Q08174 1060 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 SGO2Q562F6 1265 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 EAPPQ56P03 285 aaPredicted RBP7.07□□□□□ -1.28
XRN1-213ENST00000489241 TCF12Q99081 682 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 BCL2L13Q9BXK5 485 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 KRTAP9-2Q9BYQ4 174 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 NRSN2Q9GZP1 204 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 LIN7BQ9HAP6 207 aa7.07□□□□□ -1.28
XRN1-213ENST00000489241 MAPK8P45983 427 aa7.06□□□□□ -1.28
XRN1-213ENST00000489241 EXOSC6Q5RKV6 272 aaKnown RBP7.06□□□□□ -1.28
XRN1-213ENST00000489241 MCTP1Q6DN14 999 aa7.06□□□□□ -1.28
XRN1-213ENST00000489241 CSRNP1Q96S65 589 aa7.06□□□□□ -1.28
XRN1-213ENST00000489241 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.05□□□□□ -1.28
XRN1-213ENST00000489241 EIF1AYO14602 144 aaKnown RBP7.05□□□□□ -1.28
XRN1-213ENST00000489241 RXRBP28702 533 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 GRIA4P48058 902 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 ATP2B2Q01814 1243 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 FMR1Q06787 632 aaKnown RBP eCLIP7.05□□□□□ -1.28
XRN1-213ENST00000489241 DTX1Q86Y01 620 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 GIMAP7Q8NHV1 300 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 MRRFQ96E11 262 aaKnown RBP7.05□□□□□ -1.28
XRN1-213ENST00000489241 MFSD14AQ96MC6 490 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 IGSF5Q9NSI5 407 aa7.05□□□□□ -1.28
XRN1-213ENST00000489241 GP2P55259 537 aaKnown RBP7.04□□□□□ -1.28
XRN1-213ENST00000489241 ORC1Q13415 861 aa7.04□□□□□ -1.28
XRN1-213ENST00000489241 HP1BP3Q5SSJ5 553 aaPredicted RBP7.04□□□□□ -1.28
XRN1-213ENST00000489241 KIAA0319Q5VV43 1072 aa7.04□□□□□ -1.28
XRN1-213ENST00000489241 USPL1Q5W0Q7 1092 aa7.04□□□□□ -1.28
XRN1-213ENST00000489241 C2CD4AQ8NCU7 369 aaPredicted RBP7.04□□□□□ -1.28
XRN1-213ENST00000489241 GIPC2Q8TF65 315 aa7.04□□□□□ -1.28
XRN1-213ENST00000489241 PNMA6FA0A0J9YX94 578 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 FAM95CA0A1B0GW59 222 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 WDR64B1ANS9 1081 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 CYP11A1P05108 521 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 ADH5P11766 374 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 DRD2P14416 443 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 USP11P51784 963 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 ENOX2Q16206 610 aaKnown RBP7.03□□□□□ -1.28
XRN1-213ENST00000489241 CPSF6Q16630 551 aaKnown RBP eCLIP7.03□□□□□ -1.28
XRN1-213ENST00000489241 ZNF423Q2M1K9 1284 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 SPRED3Q2MJR0 410 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 ZNF326Q5BKZ1 582 aaKnown RBP7.03□□□□□ -1.28
XRN1-213ENST00000489241 ALG1LQ6GMV1 187 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 PAOXQ6QHF9 649 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 YIPF2Q9BWQ6 316 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 BCL11AQ9H165 835 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 ZNF576Q9H609 170 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 NPHS2Q9NP85 383 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 PIM2Q9P1W9 311 aa7.03□□□□□ -1.28
XRN1-213ENST00000489241 KRTAP9-6A0A140TA67 174 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 IGSF3O75054 1194 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 B3GALT4O96024 378 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 P4HBP07237 508 aaKnown RBP7.02□□□□□ -1.29
XRN1-213ENST00000489241 MAOBP27338 520 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 SOX4Q06945 474 aaPredicted RBP7.02□□□□□ -1.29
XRN1-213ENST00000489241 FBXO33Q7Z6M2 555 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 DDX54Q8TDD1 881 aaKnown RBP7.02□□□□□ -1.29
XRN1-213ENST00000489241 EHD4Q9H223 541 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 ZFYVE1Q9HBF4 777 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 ATG3Q9NT62 314 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 NLRP2Q9NX02 1062 aa7.02□□□□□ -1.29
XRN1-213ENST00000489241 OAS3Q9Y6K5 1087 aaKnown RBP7.02□□□□□ -1.29
XRN1-213ENST00000489241 COL17A1Q9UMD9 1497 aaPredicted RBP7.01□□□□□ -1.29
XRN1-213ENST00000489241 F13BP05160 661 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms