RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 LRRC37AA6NMS7 1700 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 IL1R1P14778 569 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 PRELPP51888 382 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 NUCB1Q02818 461 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 TNIP1Q15025 636 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 PLPP6Q8IY26 295 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 LNPKQ9C0E8 428 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 DBNLQ9UJU6 430 aaKnown RBP12.59□□□□□ -0.39
SKA1-204ENST00000488454 IRS2Q9Y4H2 1338 aa12.59□□□□□ -0.39
SKA1-204ENST00000488454 USP17L3A6NCW0 530 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 USP17L4A6NCW7 530 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 FZD9O00144 591 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 ZNF609O15014 1411 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 SEMA3EO15041 775 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 RAD17O75943 681 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 PHKA1P46020 1223 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 TTLL5Q6EMB2 1281 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 CIAPIN1Q6FI81 312 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 USP17L1Q7RTZ2 530 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 TDRD7Q8NHU6 1098 aaKnown RBP12.58□□□□□ -0.4
SKA1-204ENST00000488454 DENND2AQ9ULE3 1009 aa12.58□□□□□ -0.4
SKA1-204ENST00000488454 ZC3H4Q9UPT8 1303 aaKnown RBP12.58□□□□□ -0.4
SKA1-204ENST00000488454 GTF2IP78347 998 aa12.57□□□□□ -0.4
SKA1-204ENST00000488454 CXCL9Q07325 125 aa12.57□□□□□ -0.4
SKA1-204ENST00000488454 CHAF1AQ13111 956 aaPredicted RBP12.57□□□□□ -0.4
SKA1-204ENST00000488454 C16orf71Q8IYS4 520 aaPredicted RBP12.57□□□□□ -0.4
SKA1-204ENST00000488454 MARVELD3Q96A59 401 aa12.57□□□□□ -0.4
SKA1-204ENST00000488454 ZSWIM6Q9HCJ5 1215 aa12.57□□□□□ -0.4
SKA1-204ENST00000488454 TLR7Q9NYK1 1049 aaKnown RBP12.57□□□□□ -0.4
SKA1-204ENST00000488454 IQSEC3Q9UPP2 1182 aaPredicted RBP12.57□□□□□ -0.4
SKA1-204ENST00000488454 GJA3Q9Y6H8 435 aa12.57□□□□□ -0.4
SKA1-204ENST00000488454 FER1L6Q2WGJ9 1857 aa12.57□□□□□ -0.4
SKA1-204ENST00000488454 DUOX1Q9NRD9 1551 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 YDJCA8MPS7 323 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 HOXB1P14653 301 aaPredicted RBP12.56□□□□□ -0.4
SKA1-204ENST00000488454 STRIP1Q5VSL9 837 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 WDR66Q8TBY9 1149 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 TBC1D22AQ8WUA7 517 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 ZNF512BQ96KM6 892 aaPredicted RBP12.56□□□□□ -0.4
SKA1-204ENST00000488454 LARP6Q9BRS8 491 aaKnown RBP12.56□□□□□ -0.4
SKA1-204ENST00000488454 KCNQ5Q9NR82 932 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 ECHDC1Q9NTX5 307 aa12.56□□□□□ -0.4
SKA1-204ENST00000488454 ERC2O15083 957 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 SLC34A2O95436 690 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 MX1P20591 662 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 ARID4AP29374 1257 aaPredicted RBP12.55□□□□□ -0.4
SKA1-204ENST00000488454 PPP1R15BQ5SWA1 713 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 GPR153Q6NV75 609 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 GPC2Q8N158 579 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 SPATA5Q8NB90 893 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 KDM2BQ8NHM5 1336 aa12.55□□□□□ -0.4
SKA1-204ENST00000488454 LTBP1Q14766 1721 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 GLTPD2A6NH11 291 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 PSMD14O00487 310 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 VIL1P09327 827 aaKnown RBP12.54□□□□□ -0.4
SKA1-204ENST00000488454 ATP5JP18859 108 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 RASGRF1Q13972 1273 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 RSBN1LQ6PCB5 846 aaPredicted RBP12.54□□□□□ -0.4
SKA1-204ENST00000488454 ZGPATQ8N5A5 531 aaKnown RBP12.54□□□□□ -0.4
SKA1-204ENST00000488454 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.54□□□□□ -0.4
SKA1-204ENST00000488454 BOLA2Q9H3K6 86 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 JAG2Q9Y219 1238 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 GTF3C3Q9Y5Q9 886 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 TTC41PQ6P2S7 1318 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 FAM205AQ6ZU69 1335 aa12.54□□□□□ -0.4
SKA1-204ENST00000488454 UTRNP46939 3433 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 GLRX3O76003 335 aaKnown RBP12.53□□□□□ -0.4
SKA1-204ENST00000488454 DDNO94850 711 aaPredicted RBP12.53□□□□□ -0.4
SKA1-204ENST00000488454 RPS12P25398 132 aaKnown RBP12.53□□□□□ -0.4
SKA1-204ENST00000488454 FKBP1AP62942 108 aaKnown RBP12.53□□□□□ -0.4
SKA1-204ENST00000488454 MFSD10Q14728 455 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 MFSD14BQ5SR56 506 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 DACT2Q5SW24 774 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 SPTY2D1Q68D10 685 aaPredicted RBP12.53□□□□□ -0.4
SKA1-204ENST00000488454 SNRKQ9NRH2 765 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 HMG20BQ9P0W2 317 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 MYO3BQ8WXR4 1341 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 ZNF541Q9H0D2 1346 aa12.53□□□□□ -0.4
SKA1-204ENST00000488454 LMOD1P29536 600 aaPredicted RBP12.52□□□□□ -0.41
SKA1-204ENST00000488454 MCAMP43121 646 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 PDE1AP54750 535 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 EMP3P54852 163 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 TTF1Q15361 905 aaPredicted RBP12.52□□□□□ -0.41
SKA1-204ENST00000488454 ARSIQ5FYB1 569 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 OGFOD1Q8N543 542 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 AGBL3Q8NEM8 1001 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 OTUD7AQ8TE49 926 aaPredicted RBP12.52□□□□□ -0.41
SKA1-204ENST00000488454 DDX27Q96GQ7 796 aaKnown RBP12.52□□□□□ -0.41
SKA1-204ENST00000488454 DNAJC2Q99543 621 aaKnown RBP12.52□□□□□ -0.41
SKA1-204ENST00000488454 LRP2BPQ9P2M1 347 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 ABCF2Q9UG63 623 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 STAP2Q9UGK3 403 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 HDAC9Q9UKV0 1011 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 SUGT1Q9Y2Z0 365 aa12.52□□□□□ -0.41
SKA1-204ENST00000488454 PDS5AQ29RF7 1337 aaKnown RBP12.52□□□□□ -0.41
SKA1-204ENST00000488454 H7C1D1 291 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 LDHBP07195 334 aaKnown RBP12.51□□□□□ -0.41
SKA1-204ENST00000488454 ZAP70P43403 619 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 GMPSP49915 693 aaPredicted RBP12.51□□□□□ -0.41
SKA1-204ENST00000488454 SCARF1Q14162 830 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms