RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 TDRD3Q9H7E2 651 aaKnown RBP18.48■□□□□ 0.55
TRIM54-204ENST00000488321 SUGT1Q9Y2Z0 365 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 MAST3O60307 1309 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 AOX1Q06278 1338 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 COL1A1P02452 1464 aaPredicted RBP18.47■□□□□ 0.55
TRIM54-204ENST00000488321 HHIPL1Q96JK4 782 aa18.47■□□□□ 0.55
TRIM54-204ENST00000488321 HDLBPQ00341 1268 aaKnown RBP18.46■□□□□ 0.55
TRIM54-204ENST00000488321 RASGRF1Q13972 1273 aa18.46■□□□□ 0.55
TRIM54-204ENST00000488321 ZBTB40Q9NUA8 1239 aa18.46■□□□□ 0.55
TRIM54-204ENST00000488321 ZNF70Q9UC06 446 aaPredicted RBP18.46■□□□□ 0.55
TRIM54-204ENST00000488321 NOP58Q9Y2X3 529 aaKnown RBP18.46■□□□□ 0.55
TRIM54-204ENST00000488321 AOC2O75106 756 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 LDHBP07195 334 aaKnown RBP18.45■□□□□ 0.54
TRIM54-204ENST00000488321 PRDX5P30044 214 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 FKBP1BP68106 108 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 PRKG1Q13976 671 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 SPDYE2Q495Y8 402 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 TNNI3KQ59H18 835 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 RGMBQ6NW40 437 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 MOB2Q70IA6 237 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 EXOC6BQ9Y2D4 811 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 FPGT-TNNI3KV9GXZ4 949 aa18.45■□□□□ 0.54
TRIM54-204ENST00000488321 HMMRO75330 724 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 ZNF157P51786 506 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-204ENST00000488321 TNFAIP1Q13829 316 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 RASA3Q14644 834 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 RPAP2Q8IXW5 612 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-204ENST00000488321 ZGPATQ8N5A5 531 aaKnown RBP18.44■□□□□ 0.54
TRIM54-204ENST00000488321 AIDAQ96BJ3 306 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 GPR108Q9NPR9 543 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 ABCF2Q9UG63 623 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 PPP2R3BQ9Y5P8 575 aa18.44■□□□□ 0.54
TRIM54-204ENST00000488321 TCP10L2B9ZVM9 353 aa18.43■□□□□ 0.54
TRIM54-204ENST00000488321 UBE2Q2LH0YL09 131 aa18.43■□□□□ 0.54
TRIM54-204ENST00000488321 DIXDC1Q155Q3 683 aa18.43■□□□□ 0.54
TRIM54-204ENST00000488321 ZDHHC15Q96MV8 337 aa18.43■□□□□ 0.54
TRIM54-204ENST00000488321 TMOD2Q9NZR1 351 aa18.43■□□□□ 0.54
TRIM54-204ENST00000488321 SALL1Q9NSC2 1324 aa18.43■□□□□ 0.54
TRIM54-204ENST00000488321 MAP2K1Q02750 393 aaPredicted RBP18.42■□□□□ 0.54
TRIM54-204ENST00000488321 CCDC158Q5M9N0 1113 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 TTC39AQ5SRH9 613 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 HHIPL2Q6UWX4 724 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 ARMC9Q7Z3E5 817 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 ERC1Q8IUD2 1116 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 DBNDD2Q9BQY9 259 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 MRIQ9BWK5 157 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 HMG20BQ9P0W2 317 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 PCNTO95613 3336 aa18.42■□□□□ 0.54
TRIM54-204ENST00000488321 APBB1O00213 710 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 UQCRFS1P1P0C7P4 283 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 MAP2K2P36507 400 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 TNNI2P48788 182 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 CACNB3P54284 484 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 NOGQ13253 232 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 SUPT20HL1Q3ZLR7 823 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 HSP90AB4PQ58FF6 505 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 APOBEC3HQ6NTF7 200 aaKnown RBP18.41■□□□□ 0.54
TRIM54-204ENST00000488321 PI16Q6UXB8 463 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 DZIP1Q86YF9 867 aaKnown RBP18.41■□□□□ 0.54
TRIM54-204ENST00000488321 SPATA5Q8NB90 893 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 CCDC102AQ96A19 550 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 BCL11AQ9H165 835 aa18.41■□□□□ 0.54
TRIM54-204ENST00000488321 PDS5AQ29RF7 1337 aaKnown RBP18.41■□□□□ 0.54
TRIM54-204ENST00000488321 TRPM7Q96QT4 1865 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 ZBTB22O15209 634 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 ARID4AP29374 1257 aaPredicted RBP18.4■□□□□ 0.54
TRIM54-204ENST00000488321 NBPF12Q5TAG4 269 aaPredicted RBP18.4■□□□□ 0.54
TRIM54-204ENST00000488321 SPTY2D1Q68D10 685 aaPredicted RBP18.4■□□□□ 0.54
TRIM54-204ENST00000488321 SIRT2Q8IXJ6 389 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 BEGAINQ9BUH8 593 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 CCDC8Q9H0W5 538 aaPredicted RBP18.4■□□□□ 0.54
TRIM54-204ENST00000488321 WBP1LQ9NX94 342 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.4■□□□□ 0.54
TRIM54-204ENST00000488321 ANGEL1Q9UNK9 670 aaKnown RBP18.4■□□□□ 0.54
TRIM54-204ENST00000488321 FZD1Q9UP38 647 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 DAGLAQ9Y4D2 1042 aa18.4■□□□□ 0.54
TRIM54-204ENST00000488321 PPP1R12BO60237 982 aaPredicted RBP18.39■□□□□ 0.53
TRIM54-204ENST00000488321 RRP1P56182 461 aaKnown RBP18.39■□□□□ 0.53
TRIM54-204ENST00000488321 ERICH6Q7L0X2 663 aa18.39■□□□□ 0.53
TRIM54-204ENST00000488321 EAF2Q96CJ1 260 aaPredicted RBP18.39■□□□□ 0.53
TRIM54-204ENST00000488321 IL1RAPL2Q9NP60 686 aa18.39■□□□□ 0.53
TRIM54-204ENST00000488321 TLR7Q9NYK1 1049 aaKnown RBP18.39■□□□□ 0.53
TRIM54-204ENST00000488321 FAM155AB1AL88 458 aaPredicted RBP18.38■□□□□ 0.53
TRIM54-204ENST00000488321 FOXN1O15353 648 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 MCAMP43121 646 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 TBC1D9Q6ZT07 1266 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 AACSQ86V21 672 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 ZIC5Q96T25 663 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 TMEM39BQ9GZU3 492 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 SNRKQ9NRH2 765 aa18.38■□□□□ 0.53
TRIM54-204ENST00000488321 DBNLQ9UJU6 430 aaKnown RBP18.38■□□□□ 0.53
TRIM54-204ENST00000488321 SLC10A3P09131 477 aa18.37■□□□□ 0.53
TRIM54-204ENST00000488321 KIF23Q02241 960 aaPredicted RBP18.37■□□□□ 0.53
TRIM54-204ENST00000488321 RASAL3Q86YV0 1011 aa18.37■□□□□ 0.53
TRIM54-204ENST00000488321 SLF2Q8IX21 1173 aa18.37■□□□□ 0.53
TRIM54-204ENST00000488321 RHPN1Q8TCX5 695 aa18.37■□□□□ 0.53
TRIM54-204ENST00000488321 RAI14Q9P0K7 980 aa18.37■□□□□ 0.53
TRIM54-204ENST00000488321 ARAP2Q8WZ64 1704 aa18.37■□□□□ 0.53
TRIM54-204ENST00000488321 CDC42EP5Q6NZY7 148 aa18.36■□□□□ 0.53
TRIM54-204ENST00000488321 CDAN1Q8IWY9 1227 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms