RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 KSR2Q6VAB6 950 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 HELBQ8NG08 1087 aaPredicted RBP11.89□□□□□ -0.51
COL17A1-207ENST00000488320 RUNDC1Q96C34 613 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 CHMP4AQ9BY43 222 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 TMEM39BQ9GZU3 492 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 CPA4Q9UI42 421 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 RIPOR2Q9Y4F9 1068 aa11.89□□□□□ -0.51
COL17A1-207ENST00000488320 COL6A3P12111 3177 aa11.88□□□□□ -0.51
COL17A1-207ENST00000488320 PI4KAP2A4QPH2 592 aa11.88□□□□□ -0.51
COL17A1-207ENST00000488320 FARP2O94887 1054 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-207ENST00000488320 HOXD11P31277 338 aaPredicted RBP11.88□□□□□ -0.51
COL17A1-207ENST00000488320 CWF19L2Q2TBE0 894 aaKnown RBP11.88□□□□□ -0.51
COL17A1-207ENST00000488320 SPDYE2Q495Y8 402 aa11.88□□□□□ -0.51
COL17A1-207ENST00000488320 CCDC30Q5VVM6 783 aa11.88□□□□□ -0.51
COL17A1-207ENST00000488320 UBE3BQ7Z3V4 1068 aa11.88□□□□□ -0.51
COL17A1-207ENST00000488320 PI4KAP1Q8N8J0 262 aa11.88□□□□□ -0.51
COL17A1-207ENST00000488320 ZCCHC17Q9NP64 241 aaKnown RBP11.88□□□□□ -0.51
COL17A1-207ENST00000488320 TTF2Q9UNY4 1162 aaKnown RBP11.88□□□□□ -0.51
COL17A1-207ENST00000488320 MYPNQ86TC9 1320 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 ANKRD18BA2A2Z9 1011 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 SPDYE5A6NIY4 337 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 PLIN1O60240 522 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 TFRCP02786 760 aaKnown RBP11.87□□□□□ -0.51
COL17A1-207ENST00000488320 IL1R1P14778 569 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 OSBPP22059 807 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 C17orf99Q6UX52 265 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 ERO1BQ86YB8 467 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 CDAN1Q8IWY9 1227 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.87□□□□□ -0.51
COL17A1-207ENST00000488320 U2AF1L4Q8WU68 220 aaKnown RBP11.87□□□□□ -0.51
COL17A1-207ENST00000488320 TEPSINQ96N21 525 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 A0A0C4DFX4 3053 aa11.87□□□□□ -0.51
COL17A1-207ENST00000488320 RANBP2P49792 3224 aaKnown RBP11.86□□□□□ -0.51
COL17A1-207ENST00000488320 NEURL1BA8MQ27 555 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 H7C1W4 665 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 IRF6O14896 467 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 SGPL1O95470 568 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 WDR43Q15061 677 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL17A1-207ENST00000488320 UBE2Q1Q7Z7E8 422 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 DZIP1LQ8IYY4 767 aaKnown RBP11.86□□□□□ -0.51
COL17A1-207ENST00000488320 DEFB123Q8N688 67 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 SERPINA10Q9UK55 444 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 CHMP3Q9Y3E7 222 aa11.86□□□□□ -0.51
COL17A1-207ENST00000488320 CTGFP29279 349 aa11.85□□□□□ -0.51
COL17A1-207ENST00000488320 GNAI1P63096 354 aa11.85□□□□□ -0.51
COL17A1-207ENST00000488320 MFSD14BQ5SR56 506 aa11.85□□□□□ -0.51
COL17A1-207ENST00000488320 C15orf52Q6ZUT6 534 aaKnown RBP11.85□□□□□ -0.51
COL17A1-207ENST00000488320 ZKSCAN4Q969J2 545 aaPredicted RBP11.85□□□□□ -0.51
COL17A1-207ENST00000488320 WRNIP1Q96S55 665 aa11.85□□□□□ -0.51
COL17A1-207ENST00000488320 UNC93B1Q9H1C4 597 aa11.85□□□□□ -0.51
COL17A1-207ENST00000488320 PDHXO00330 501 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 CSF1RP07333 972 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 CRKP46108 304 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 IFIT5Q13325 482 aaKnown RBP11.84□□□□□ -0.51
COL17A1-207ENST00000488320 PPIL2Q13356 520 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 Q7L0L9 218 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 C8orf58Q8NAV2 365 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 SLAIN1Q8ND83 568 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 HOOK2Q96ED9 719 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 PLA2G12BQ9BX93 195 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 STK31Q9BXU1 1019 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 STXBP5LQ9Y2K9 1186 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 SNCAIPQ9Y6H5 919 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 IRS2Q9Y4H2 1338 aa11.84□□□□□ -0.51
COL17A1-207ENST00000488320 ZNF853P0CG23 659 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 FCGRTP55899 365 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 PRKCZQ05513 592 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 CALD1Q05682 793 aaKnown RBP11.83□□□□□ -0.52
COL17A1-207ENST00000488320 TAF7LQ5H9L4 462 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 GPR153Q6NV75 609 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 ANKRD23Q86SG2 305 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-207ENST00000488320 COL25A1Q9BXS0 654 aaPredicted RBP11.83□□□□□ -0.52
COL17A1-207ENST00000488320 IFT57Q9NWB7 429 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 FAM205AQ6ZU69 1335 aa11.83□□□□□ -0.52
COL17A1-207ENST00000488320 ADCY3O60266 1144 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 CAPN2P17655 700 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 CACNB3P54284 484 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 PPATQ06203 517 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 GCKRQ14397 625 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 RALBP1Q15311 655 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 DCAF15Q66K64 600 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 PAWRQ96IZ0 340 aaKnown RBP11.82□□□□□ -0.52
COL17A1-207ENST00000488320 DEFB118Q96PH6 123 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 MYH16Q9H6N6 1097 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 CNNM1Q9NRU3 951 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 TMOD2Q9NZR1 351 aa11.82□□□□□ -0.52
COL17A1-207ENST00000488320 HIBADHP31937 336 aaKnown RBP11.81□□□□□ -0.52
COL17A1-207ENST00000488320 BMP8BP34820 402 aa11.81□□□□□ -0.52
COL17A1-207ENST00000488320 NECAB2Q7Z6G3 386 aa11.81□□□□□ -0.52
COL17A1-207ENST00000488320 C7orf61Q8IZ16 206 aa11.81□□□□□ -0.52
COL17A1-207ENST00000488320 ZNF341Q9BYN7 854 aa11.81□□□□□ -0.52
COL17A1-207ENST00000488320 TAOK2Q9UL54 1235 aa11.81□□□□□ -0.52
COL17A1-207ENST00000488320 GABRQQ9UN88 632 aa11.81□□□□□ -0.52
COL17A1-207ENST00000488320 CUL9Q8IWT3 2517 aa11.8□□□□□ -0.52
COL17A1-207ENST00000488320 FRAT2O75474 233 aaPredicted RBP11.8□□□□□ -0.52
COL17A1-207ENST00000488320 LDHAL6AQ6ZMR3 332 aa11.8□□□□□ -0.52
COL17A1-207ENST00000488320 MIGA2Q7L4E1 593 aa11.8□□□□□ -0.52
COL17A1-207ENST00000488320 TDRD7Q8NHU6 1098 aaKnown RBP11.8□□□□□ -0.52
COL17A1-207ENST00000488320 PARK7Q99497 189 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms