RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 GPN3Q9UHW5 284 aaPredicted RBP9.02□□□□□ -0.97
USP48-209ENST00000487880 CELA3AP09093 270 aa9.01□□□□□ -0.97
USP48-209ENST00000487880 GSK3AP49840 483 aa9.01□□□□□ -0.97
USP48-209ENST00000487880 GSTM4Q03013 218 aa9.01□□□□□ -0.97
USP48-209ENST00000487880 PPP2R3AQ06190 1150 aa9.01□□□□□ -0.97
USP48-209ENST00000487880 PAGE1O75459 146 aa9□□□□□ -0.97
USP48-209ENST00000487880 ZNF157P51786 506 aaPredicted RBP9□□□□□ -0.97
USP48-209ENST00000487880 AP3B2Q13367 1082 aa9□□□□□ -0.97
USP48-209ENST00000487880 CCDC85BQ15834 202 aaPredicted RBP9□□□□□ -0.97
USP48-209ENST00000487880 DDX54Q8TDD1 881 aaKnown RBP9□□□□□ -0.97
USP48-209ENST00000487880 DDX3YO15523 660 aaKnown RBP8.99□□□□□ -0.97
USP48-209ENST00000487880 SELPP16109 830 aa8.99□□□□□ -0.97
USP48-209ENST00000487880 FANCCQ00597 558 aa8.99□□□□□ -0.97
USP48-209ENST00000487880 IGF2-ASQ6U949 168 aa8.99□□□□□ -0.97
USP48-209ENST00000487880 TMEM87AQ8NBN3 555 aa8.99□□□□□ -0.97
USP48-209ENST00000487880 METTL5Q9NRN9 209 aaKnown RBP8.99□□□□□ -0.97
USP48-209ENST00000487880 E9PSI1 815 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 SCAMP3O14828 347 aaKnown RBP8.98□□□□□ -0.97
USP48-209ENST00000487880 CYP11A1P05108 521 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 NME2P22392 152 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 NLRP12P59046 1061 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 GRIK4Q16099 956 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 PDZD3Q86UT5 571 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 STK35Q8TDR2 534 aa8.98□□□□□ -0.97
USP48-209ENST00000487880 LOC100289279A0A1B0GTE1 492 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 WISP1O95388 367 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 BMP6P22004 513 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 SHISA2Q6UWI4 295 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 ERMP1Q7Z2K6 904 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 SULF2Q8IWU5 870 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 LENG1Q96BZ8 264 aaPredicted RBP8.97□□□□□ -0.97
USP48-209ENST00000487880 DCAF5Q96JK2 942 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 MRPL18Q9H0U6 180 aaKnown RBP8.97□□□□□ -0.97
USP48-209ENST00000487880 IGSF5Q9NSI5 407 aa8.97□□□□□ -0.97
USP48-209ENST00000487880 MAOBP27338 520 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 ARNTP27540 789 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 ZNF252P-AS1Q0IIN9 211 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 RASIP1Q5U651 963 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 PCNX4Q63HM2 1172 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 KIAA1211Q6ZU35 1233 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 TMEM151AQ8N4L1 468 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 UBASH3BQ8TF42 649 aa8.96□□□□□ -0.98
USP48-209ENST00000487880 KRBA1A5PL33 1030 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 ECEL1O95672 775 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 DLGAP3O95886 979 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 CTSBP07858 339 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 GSTP1P09211 210 aaKnown RBP8.95□□□□□ -0.98
USP48-209ENST00000487880 ZNF76P36508 570 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 POU4F3Q15319 338 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.95□□□□□ -0.98
USP48-209ENST00000487880 TMEM130Q8N3G9 435 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 NACC1Q96RE7 527 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 USP26Q9BXU7 913 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 CACNA2D2Q9NY47 1150 aa8.95□□□□□ -0.98
USP48-209ENST00000487880 RLBP1P12271 317 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 LIG3P49916 1009 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 RPS26P62854 115 aaKnown RBP8.94□□□□□ -0.98
USP48-209ENST00000487880 RASSF7Q02833 373 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 DUOXA2Q1HG44 320 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 TTBK2Q6IQ55 1244 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 METTL16Q86W50 562 aaKnown RBP8.94□□□□□ -0.98
USP48-209ENST00000487880 CORO1BQ9BR76 489 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 RSRP1Q9BUV0 290 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 EMILIN2Q9BXX0 1053 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 SAMM50Q9Y512 469 aa8.94□□□□□ -0.98
USP48-209ENST00000487880 C9orf172C9J069 976 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 F8W735 103 aaPredicted RBP8.93□□□□□ -0.98
USP48-209ENST00000487880 GDF11O95390 407 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 APBA3O96018 575 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 HDLBPQ00341 1268 aaKnown RBP8.93□□□□□ -0.98
USP48-209ENST00000487880 SCARA3Q6AZY7 606 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 AGMOQ6ZNB7 445 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 HS2ST1Q7LGA3 356 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 PHC3Q8NDX5 983 aa8.93□□□□□ -0.98
USP48-209ENST00000487880 LOC100996750A0A140TA64 210 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 MEGF11A6BM72 1044 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 TCF3P15923 654 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 NRG1Q02297 640 aaPredicted RBP8.92□□□□□ -0.98
USP48-209ENST00000487880 Q6ZS46 218 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 ACAD11Q709F0 780 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 NPM2Q86SE8 214 aaKnown RBP8.92□□□□□ -0.98
USP48-209ENST00000487880 TMPRSS13Q9BYE2 586 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 KRTAP4-6Q9BYQ5 205 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 CCDC86Q9H6F5 360 aaKnown RBP8.92□□□□□ -0.98
USP48-209ENST00000487880 KRT82Q9NSB4 513 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 CYP8B1Q9UNU6 501 aa8.92□□□□□ -0.98
USP48-209ENST00000487880 ADGRE1Q14246 886 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 MBTPS1Q14703 1052 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 LRRC14Q15048 493 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 MAP3K11Q16584 847 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 LLGL2Q6P1M3 1020 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 GRIN3AQ8TCU5 1115 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 RNF34Q969K3 372 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 RHOVQ96L33 236 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 TMEM74Q96NL1 305 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 COPRSQ9NQ92 184 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 GGT7Q9UJ14 662 aa8.91□□□□□ -0.98
USP48-209ENST00000487880 CHRNA4P43681 627 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 PWP1Q13610 501 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 HP1BP3Q5SSJ5 553 aaPredicted RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms