RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SERPINA10Q9UK55 444 aa19.56■□□□□ 0.72
MCF2L-228ENST00000487354 DZIP1LQ8IYY4 767 aaKnown RBP19.55■□□□□ 0.72
MCF2L-228ENST00000487354 TTF2Q9UNY4 1162 aaKnown RBP19.55■□□□□ 0.72
MCF2L-228ENST00000487354 CHMP3Q9Y3E7 222 aa19.55■□□□□ 0.72
MCF2L-228ENST00000487354 RANBP2P49792 3224 aaKnown RBP19.55■□□□□ 0.72
MCF2L-228ENST00000487354 CCL15-CCL14A0A0B4J2E2 113 aa19.54■□□□□ 0.72
MCF2L-228ENST00000487354 GYG1P46976 350 aa19.54■□□□□ 0.72
MCF2L-228ENST00000487354 TNFAIP1Q13829 316 aa19.54■□□□□ 0.72
MCF2L-228ENST00000487354 CCL15Q16663 113 aa19.54■□□□□ 0.72
MCF2L-228ENST00000487354 FAM84BQ96KN1 310 aaPredicted RBP19.54■□□□□ 0.72
MCF2L-228ENST00000487354 ARHGAP39Q9C0H5 1083 aa19.54■□□□□ 0.72
MCF2L-228ENST00000487354 MYH13Q9UKX3 1938 aa19.53■□□□□ 0.72
MCF2L-228ENST00000487354 TCP10L2B9ZVM9 353 aa19.53■□□□□ 0.72
MCF2L-228ENST00000487354 PLIN1O60240 522 aa19.53■□□□□ 0.72
MCF2L-228ENST00000487354 TAF1CQ15572 869 aaPredicted RBP19.53■□□□□ 0.72
MCF2L-228ENST00000487354 LDHAL6AQ6ZMR3 332 aa19.53■□□□□ 0.72
MCF2L-228ENST00000487354 KAZALD1Q96I82 304 aa19.53■□□□□ 0.72
MCF2L-228ENST00000487354 GRM8O00222 908 aa19.52■□□□□ 0.72
MCF2L-228ENST00000487354 CRKP46108 304 aa19.52■□□□□ 0.72
MCF2L-228ENST00000487354 PUS3Q9BZE2 481 aaKnown RBP19.52■□□□□ 0.72
MCF2L-228ENST00000487354 COLQQ9Y215 455 aaPredicted RBP19.52■□□□□ 0.72
MCF2L-228ENST00000487354 SNCAIPQ9Y6H5 919 aa19.52■□□□□ 0.72
MCF2L-228ENST00000487354 SPDYE5A6NIY4 337 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 GTF2A2P52657 109 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 MAP3K9P80192 1104 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 UBE4AQ14139 1066 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 SLC9C1Q4G0N8 1177 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 NCBP3Q53F19 620 aaKnown RBP19.51■□□□□ 0.71
MCF2L-228ENST00000487354 OTUD5Q96G74 571 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 ZFYVE28Q9HCC9 887 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 CNNM1Q9NRU3 951 aa19.51■□□□□ 0.71
MCF2L-228ENST00000487354 HIBADHP31937 336 aaKnown RBP19.5■□□□□ 0.71
MCF2L-228ENST00000487354 EXOSC9Q06265 439 aaKnown RBP19.5■□□□□ 0.71
MCF2L-228ENST00000487354 CCDC57Q2TAC2 916 aa19.5■□□□□ 0.71
MCF2L-228ENST00000487354 TMEM106CQ9BVX2 250 aa19.5■□□□□ 0.71
MCF2L-228ENST00000487354 MGAMO43451 1857 aa19.5■□□□□ 0.71
MCF2L-228ENST00000487354 CTGFP29279 349 aa19.49■□□□□ 0.71
MCF2L-228ENST00000487354 CACNB3P54284 484 aa19.49■□□□□ 0.71
MCF2L-228ENST00000487354 SH3TC2Q8TF17 1288 aa19.49■□□□□ 0.71
MCF2L-228ENST00000487354 SPINK5Q9NQ38 1064 aaPredicted RBP19.49■□□□□ 0.71
MCF2L-228ENST00000487354 RIPOR2Q9Y4F9 1068 aa19.49■□□□□ 0.71
MCF2L-228ENST00000487354 BTBD19C9JJ37 291 aa19.48■□□□□ 0.71
MCF2L-228ENST00000487354 TLR2O60603 784 aa19.48■□□□□ 0.71
MCF2L-228ENST00000487354 LACTBP83111 547 aaPredicted RBP19.48■□□□□ 0.71
MCF2L-228ENST00000487354 FBXO33Q7Z6M2 555 aa19.48■□□□□ 0.71
MCF2L-228ENST00000487354 SHISA4Q96DD7 197 aa19.48■□□□□ 0.71
MCF2L-228ENST00000487354 SUCLG2Q96I99 432 aa19.48■□□□□ 0.71
MCF2L-228ENST00000487354 TAF7LQ5H9L4 462 aa19.47■□□□□ 0.71
MCF2L-228ENST00000487354 IQSEC3Q9UPP2 1182 aaPredicted RBP19.47■□□□□ 0.71
MCF2L-228ENST00000487354 CSADQ9Y600 493 aa19.47■□□□□ 0.71
MCF2L-228ENST00000487354 ADGRA2Q96PE1 1338 aa19.47■□□□□ 0.71
MCF2L-228ENST00000487354 RPAP1Q9BWH6 1393 aaPredicted RBP19.46■□□□□ 0.71
MCF2L-228ENST00000487354 H0YGN5 161 aa19.46■□□□□ 0.71
MCF2L-228ENST00000487354 IRF6O14896 467 aa19.46■□□□□ 0.71
MCF2L-228ENST00000487354 MYCP01106 439 aaPredicted RBP19.46■□□□□ 0.71
MCF2L-228ENST00000487354 NBPF11Q86T75 865 aa19.46■□□□□ 0.71
MCF2L-228ENST00000487354 VGLL2Q8N8G2 317 aa19.46■□□□□ 0.71
MCF2L-228ENST00000487354 ZKSCAN4Q969J2 545 aaPredicted RBP19.46■□□□□ 0.71
MCF2L-228ENST00000487354 ZCCHC17Q9NP64 241 aaKnown RBP19.46■□□□□ 0.71
MCF2L-228ENST00000487354 TNNI2P48788 182 aa19.45■□□□□ 0.7
MCF2L-228ENST00000487354 HDLBPQ00341 1268 aaKnown RBP19.45■□□□□ 0.7
MCF2L-228ENST00000487354 SLC4A8Q2Y0W8 1093 aa19.45■□□□□ 0.7
MCF2L-228ENST00000487354 ERO1BQ86YB8 467 aa19.45■□□□□ 0.7
MCF2L-228ENST00000487354 PTPRFP10586 1907 aa19.45■□□□□ 0.7
MCF2L-228ENST00000487354 ALDH1L1O75891 902 aa19.44■□□□□ 0.7
MCF2L-228ENST00000487354 NBPF7P0C2Y1 421 aaPredicted RBP19.44■□□□□ 0.7
MCF2L-228ENST00000487354 CETPP11597 493 aa19.44■□□□□ 0.7
MCF2L-228ENST00000487354 APOBEC3HQ6NTF7 200 aaKnown RBP19.44■□□□□ 0.7
MCF2L-228ENST00000487354 ZDHHC15Q96MV8 337 aa19.44■□□□□ 0.7
MCF2L-228ENST00000487354 WRNIP1Q96S55 665 aa19.44■□□□□ 0.7
MCF2L-228ENST00000487354 UTYO14607 1347 aa19.44■□□□□ 0.7
MCF2L-228ENST00000487354 CHAF1AQ13111 956 aaPredicted RBP19.43■□□□□ 0.7
MCF2L-228ENST00000487354 PPIL2Q13356 520 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 ARHGEF6Q15052 776 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 MTFR1Q15390 333 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 RABL6Q3YEC7 729 aaPredicted RBP19.43■□□□□ 0.7
MCF2L-228ENST00000487354 LRRC24Q50LG9 513 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 C17orf99Q6UX52 265 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 FAM83AQ86UY5 434 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 WDR63Q8IWG1 891 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 ANKRD44Q8N8A2 993 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 DOCK2Q92608 1830 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 MROH5Q6ZUA9 1318 aa19.43■□□□□ 0.7
MCF2L-228ENST00000487354 SNAPC2Q13487 334 aa19.42■□□□□ 0.7
MCF2L-228ENST00000487354 MOGSQ13724 837 aa19.42■□□□□ 0.7
MCF2L-228ENST00000487354 UBE2Q1Q7Z7E8 422 aa19.42■□□□□ 0.7
MCF2L-228ENST00000487354 TEKT1Q969V4 418 aa19.42■□□□□ 0.7
MCF2L-228ENST00000487354 C9orf78Q9NZ63 289 aaPredicted RBP19.42■□□□□ 0.7
MCF2L-228ENST00000487354 AK9Q5TCS8 1911 aa19.42■□□□□ 0.7
MCF2L-228ENST00000487354 PHIPQ8WWQ0 1821 aa19.41■□□□□ 0.7
MCF2L-228ENST00000487354 ALPK3Q96L96 1907 aa19.41■□□□□ 0.7
MCF2L-228ENST00000487354 FKBP1CQ5VVH2 108 aa19.41■□□□□ 0.7
MCF2L-228ENST00000487354 TRIM47Q96LD4 638 aa19.41■□□□□ 0.7
MCF2L-228ENST00000487354 SRCIN1Q9C0H9 1055 aa19.41■□□□□ 0.7
MCF2L-228ENST00000487354 BICC1Q9H694 974 aaKnown RBP19.41■□□□□ 0.7
MCF2L-228ENST00000487354 GNRH1P01148 92 aa19.4■□□□□ 0.7
MCF2L-228ENST00000487354 INPP5BP32019 993 aa19.4■□□□□ 0.7
MCF2L-228ENST00000487354 TBC1D22AQ8WUA7 517 aa19.4■□□□□ 0.7
MCF2L-228ENST00000487354 MRIQ9BWK5 157 aa19.4■□□□□ 0.7
MCF2L-228ENST00000487354 CPA4Q9UI42 421 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms