RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 TDRD7Q8NHU6 1098 aaKnown RBP17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 OPTNQ96CV9 577 aa17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 FAM84BQ96KN1 310 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 PTPN18Q99952 460 aa17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 SRCIN1Q9C0H9 1055 aa17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 IQSEC3Q9UPP2 1182 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 MYH13Q9UKX3 1938 aa17.51■□□□□ 0.39
SQSTM1-208ENST00000485412 ZNF521Q96K83 1311 aa17.5■□□□□ 0.39
SQSTM1-208ENST00000485412 TESPA1A2RU30 521 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-208ENST00000485412 ARHGEF6Q15052 776 aa17.5■□□□□ 0.39
SQSTM1-208ENST00000485412 MFSD14BQ5SR56 506 aa17.5■□□□□ 0.39
SQSTM1-208ENST00000485412 BICC1Q9H694 974 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-208ENST00000485412 RIPOR2Q9Y4F9 1068 aa17.5■□□□□ 0.39
SQSTM1-208ENST00000485412 ZNF316A6NFI3 1004 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 CAP1Q01518 475 aa17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 LRRC24Q50LG9 513 aa17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 ANKRD44Q8N8A2 993 aa17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 TDRD3Q9H7E2 651 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 TTF2Q9UNY4 1162 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 ZSWIM8A7E2V4 1837 aa17.49■□□□□ 0.39
SQSTM1-208ENST00000485412 UTYO14607 1347 aa17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 HIBADHP31937 336 aaKnown RBP17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 UBE4AQ14139 1066 aa17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 TAF1CQ15572 869 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 SPDYE2Q495Y8 402 aa17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 KLHDC4Q8TBB5 520 aa17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 CNKSR2Q8WXI2 1034 aa17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 ZFYVE28Q9HCC9 887 aa17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 ZNF70Q9UC06 446 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-208ENST00000485412 SLC9C1Q4G0N8 1177 aa17.47■□□□□ 0.39
SQSTM1-208ENST00000485412 NBPF11Q86T75 865 aa17.47■□□□□ 0.39
SQSTM1-208ENST00000485412 MRPL50Q8N5N7 158 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-208ENST00000485412 ZNF333Q96JL9 665 aa17.47■□□□□ 0.39
SQSTM1-208ENST00000485412 TEPSINQ96N21 525 aa17.47■□□□□ 0.39
SQSTM1-208ENST00000485412 CCL15-CCL14A0A0B4J2E2 113 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 TCP10L2B9ZVM9 353 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 TNNI2P48788 182 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 GTF2A2P52657 109 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 CHAF1AQ13111 956 aaPredicted RBP17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 CCL15Q16663 113 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 SLC4A8Q2Y0W8 1093 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 RABL6Q3YEC7 729 aaPredicted RBP17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 DZIP1LQ8IYY4 767 aaKnown RBP17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 VGLL2Q8N8G2 317 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 MS4A4AQ96JQ5 239 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 TMEM39BQ9GZU3 492 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 SERPINA10Q9UK55 444 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 CSADQ9Y600 493 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 PTCH2Q9Y6C5 1203 aa17.46■□□□□ 0.39
SQSTM1-208ENST00000485412 WDHD1O75717 1129 aaPredicted RBP17.45■□□□□ 0.38
SQSTM1-208ENST00000485412 CRKP46108 304 aa17.45■□□□□ 0.38
SQSTM1-208ENST00000485412 CACNB3P54284 484 aa17.45■□□□□ 0.38
SQSTM1-208ENST00000485412 FBXO33Q7Z6M2 555 aa17.45■□□□□ 0.38
SQSTM1-208ENST00000485412 BRI3BPQ8WY22 251 aa17.45■□□□□ 0.38
SQSTM1-208ENST00000485412 MAP3K9P80192 1104 aa17.44■□□□□ 0.38
SQSTM1-208ENST00000485412 VGLL4Q14135 290 aa17.44■□□□□ 0.38
SQSTM1-208ENST00000485412 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-208ENST00000485412 OTUD5Q96G74 571 aa17.44■□□□□ 0.38
SQSTM1-208ENST00000485412 MYCP01106 439 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-208ENST00000485412 FXR1P51114 621 aaKnown RBP eCLIP17.43■□□□□ 0.38
SQSTM1-208ENST00000485412 METTL24Q5JXM2 366 aa17.43■□□□□ 0.38
SQSTM1-208ENST00000485412 SSH1Q8WYL5 1049 aa17.43■□□□□ 0.38
SQSTM1-208ENST00000485412 MROH5Q6ZUA9 1318 aa17.43■□□□□ 0.38
SQSTM1-208ENST00000485412 BCAMP50895 628 aa17.42■□□□□ 0.38
SQSTM1-208ENST00000485412 KIF22Q14807 665 aa17.42■□□□□ 0.38
SQSTM1-208ENST00000485412 FAM43AQ8N2R8 423 aa17.42■□□□□ 0.38
SQSTM1-208ENST00000485412 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.42■□□□□ 0.38
SQSTM1-208ENST00000485412 USP44Q9H0E7 712 aa17.42■□□□□ 0.38
SQSTM1-208ENST00000485412 COLQQ9Y215 455 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-208ENST00000485412 PDE8BO95263 885 aa17.4■□□□□ 0.38
SQSTM1-208ENST00000485412 VPS37DQ86XT2 251 aa17.4■□□□□ 0.38
SQSTM1-208ENST00000485412 CEP290O15078 2479 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 SPDYE5A6NIY4 337 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 CETPP11597 493 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 FGFR2P21802 821 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 RFX5P48382 616 aaPredicted RBP17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 SH3TC2Q8TF17 1288 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 CDCA7LQ96GN5 454 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 TMOD2Q9NZR1 351 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 AK9Q5TCS8 1911 aa17.39■□□□□ 0.37
SQSTM1-208ENST00000485412 TLR2O60603 784 aa17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 FRAT2O75474 233 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 APOBEC3HQ6NTF7 200 aaKnown RBP17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 ERO1BQ86YB8 467 aa17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 WRNIP1Q96S55 665 aa17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 ARHGAP39Q9C0H5 1083 aa17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 PTPRCP08575 1304 aa17.38■□□□□ 0.37
SQSTM1-208ENST00000485412 LACTBP83111 547 aaPredicted RBP17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 SNAPC2Q13487 334 aa17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 CAVIN4Q5BKX8 364 aa17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 TBC1D22AQ8WUA7 517 aa17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 TEKT1Q969V4 418 aa17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 HOOK2Q96ED9 719 aa17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 ZCCHC17Q9NP64 241 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 SNCAIPQ9Y6H5 919 aa17.37■□□□□ 0.37
SQSTM1-208ENST00000485412 BTBD19C9JJ37 291 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 H0YGN5 161 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 ECM2O94769 699 aaPredicted RBP17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 GNRH1P01148 92 aa17.36■□□□□ 0.37
SQSTM1-208ENST00000485412 HDLBPQ00341 1268 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms